Gene detail

Detail information of GWHGAAZE028497

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADP37984.1	0	carotenoid cleavage dioxygenase 8 [Actinidia chinensis]
COG	YP_001424409.1	2E-68	lignostilbene-alpha,beta-dioxygenase
Swissprot	tr\|Q8LIY8\|CCD8B_ORYSJ	0	Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic (Precursor)
trEMBL	tr\|E3T3A2\|E3T3A2_ACTCH	0	Carotenoid cleavage dioxygenase 8 {ECO:0000313\|EMBL:ADP37984.1}
TAIR10	AT4G32810.1	0	carotenoid cleavage dioxygenase 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	58181149	58184306	-
GWHAAZE00000008	mRNA	58181149	58184306	-
GWHAAZE00000008	exon	58181149	58181294	-
GWHAAZE00000008	exon	58181422	58181524	-
GWHAAZE00000008	exon	58181636	58181825	-
GWHAAZE00000008	exon	58182161	58182357	-
GWHAAZE00000008	exon	58182547	58183290	-
GWHAAZE00000008	exon	58184010	58184306	-
GWHAAZE00000008	CDS	58184010	58184306	-
GWHAAZE00000008	CDS	58182547	58183290	-
GWHAAZE00000008	CDS	58182161	58182357	-
GWHAAZE00000008	CDS	58181636	58181825	-
GWHAAZE00000008	CDS	58181422	58181524	-
GWHAAZE00000008	CDS	58181149	58181294	-

Transcript Sequence
>GWHTAAZE028531 ATGGCTTCTCTTCCATTTTCAGCCACCATCGTGGCACCATCCGTGGCGTTTTCCGGTGGTGATCTTAATATTAGAGATGGTTCTGTGTTTGGGAAGGCAATCTTCTCTAGAAAGTTGGCTAAGAAAAGGGAGTTAAGTATCATGAATGTCGCGACCAAATCTCCGGCGGTGGCTCCGCCACGCCAGAGGGAGGTGACCTTTGGTGATGATCCCCGAAAGCTGGCGGCTTGGACTAGTGTCCGGCAAGAGCGGTGGGAAGGAGAGCTTCTTGTCGAAGGGGAAATACCAATATGGCTGACTGGGACATATCTAAGGAACGGGCCAGGGTTGTGGCACCTGGGAGACTATAATTTTCGCCATCTCTTCGATGGTTACGCCACCTTAGTCGGCCTTCACTTCGAGAACGGCAGACTGGTTATGGGACACAGACAAGTCGAATCAGATGCATATAAAGCAGCAAAGAAGAACAACAAGCTTTGTTACCGCGAATTCTCTGAAGTCCCGAAACACGATAACTTCCTGTCTTACATAGGTGACCTAGCCAACCTATTTTCTGGTGCATCACTGACCGATAATGCAAACACCGGTGTGGTTAGGCTTGGTGACGGGCGGGTTGTTTGCCTAACTGAGACGATAAAAGGGTCGATCGTGGTTGACCCAAACACATTGGACACGTTGGGGAAGTTTGAGTACACTGATTCACTGGGTGGGTTAATTCACTCAGCTCATCCGATTGTGACAGATACAGAGTTTTTGACTTTGTTGCCGGACTTGGTGAACCCTGGGTACTTGGTGGTGAGGATGGACCCGGGGACAAATGAGCGGAAGGTGATCGGGCGGGTGAGTTGCCGGGGTGGTCCGTCACCGGGTTGGGTGCACTCATTCCCTGTGACTGAACACTATGTTATAGTGCCTGAAATGCCCTTGAGGTATTGTGCCCAAAATTTACTAAAGGCTGAGCCCACACCACTTTATAAATTTAGGTGGCACCCTGAGTCCAAAGGTTACATGCATGTCATGTGCAAAGCTAGTGGTAACATTGTGGCAAGTGTGGAGGTTCCATTATTCGTGACATTCCACTTCATAAACGCGTACGAGGAGAAAGACGAAGATGGAAGGGTGATCGCAGTCATTGCAGACTGTTGTGAACATAATGCAGATGCCACCATCCTCGACAAGCTCCGCCTCCACAACCTCCGTTCATATAGCGGCAAAGAAGATGTCTTGCCTGATGCCAAGGTTGGTAGATTTATAATACCATTGGATGGGAGTCCAAGAGGGGAGTTGGTGGCAGCATTGAACCCAGAGGAACATGGAAAAGGGATGGATATGTGCTCCATCAATCCTGCTTACTTGGGCAAGAAATACAGATATGCCTATGCTTGTGGTGCTGAAAGGCCTTGCAATTTCCCCAATACTCTCACCAAGATTGACTTGGTAGAGAAGAAGGCAAAGAACTGGCATGTTGAGGGCGCCGTGCCATCTGAACCGTTCTTTGTGGCTCGCCCAGGTGCAACGGAGGAAGATGACGGGGTGGTGATCTCGATGGTCAGTGACAAAAACGGAGAAGGATATGCACTATTGTTGGATGGATCCACGTTTGAAGAGATTGCAAGAGCAAAATTCCCTTACGGCCTTCCATATGGTCTCCATGGATGTTGGGTTCCTAAGAACTAA

Network for GWHGAAZE028497

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03055.16	RPE65	79	556	1.30E-98

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17913	CCD8	Biosynthesis of secondary metabolites	map01110
K17913	CCD8	Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.138
	SRR3591706	second leaf	0.042
	SRR3591707	mature leaf	0.043
	SRR3591708	Shoot apex	0.120
	SRR3591709	Stem	0.423
	SRR3591710	White floral bud	0.189
	SRR3591711	White flower	0.050
	SRR3591712	Green floral bud	0.833
	SRR3591713	Yellow flower	0.066
SRP173429	SRR8316895	Juvenile bud stage	0.205
	SRR8316896	Juvenile bud stage	0.375
	SRR8316897	Juvenile bud stage	0.147
	SRR8316894	Third green stage	0.103
	SRR8316900	Third green stage	0.132
	SRR8316901	Third green stage	0.370
	SRR8316898	Complete white stage	0.069
	SRR8316899	Complete white stage	0.019
	SRR8316903	Complete white stage	0.046
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.026
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.035
SRP132670	SRR6706286	Control	0.188
	SRR6706287	Light intensity 50%	0.141
	SRR6706288	Light intensity 20%	0.181
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.219
	CNS0095593	Slightly white alabastrum(diploid) 2	0.203
	CNS0095594	Slightly white alabastrum(diploid) 3	0.288
	CNS0095595	Whole white alabastrum(diploid) 2	0.163
	CNS0095596	Whole white alabastrum(diploid) 3	0.066
	CNS0095597	Whole white alabastrum(diploid) 4	0.271
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.050
	CNS0095600	Silvery flower (diploied) 3	0.097
	CNS0095601	Golden flower (diploid) 1	0.028
	CNS0095602	Golden flower (diploid) 2	0.060
	CNS0095603	Golden flower (diploid) 3	0.015
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.115
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.098
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.972
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.640
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.091
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.119
	CNS0095610	Silvery flower (tetraploid) 1	0.040
	CNS0095611	Silvery flower (tetraploid) 2	0.046
	CNS0095612	Silvery flower (tetraploid) 3	0.028
	CNS0095613	Golden flower (tetraploid) 1	0.011
	CNS0095614	Golden flower (tetraploid) 2	0.151
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.447
	CRR073298	Stem 2	0.202
	CRR073299	Stem 3	0.182
	CRR073300	Leaf 1	0.641
	CRR073301	Leaf 2	0.184
	CRR073302	Leaf 3	0.082
	CRR073303	Juvenile bud 1	0.086
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.137
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.037
	CRR073312	Silver flowering 1	0.032
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.035
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.105
	CRR073320	Tawny withering 3	0.000