Gene detail

Detail information of GWHGAAZE028451

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009631868.1	3.7623E-173	PREDICTED: uncharacterized protein LOC104121552 [Nicotiana tomentosiformis]
trEMBL	tr\|A0A061G4Y5\|A0A061G4Y5_THECC	2E-171	Zinc finger family protein {ECO:0000313\|EMBL:EOY24473.1}
TAIR10	AT4G12240.1	5E-115	zinc finger (C2H2 type) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	57198954	57200027	+
GWHAAZE00000008	mRNA	57198954	57200027	+
GWHAAZE00000008	exon	57198954	57200027	+
GWHAAZE00000008	CDS	57198954	57200027	+

Transcript Sequence
>GWHTAAZE028485 ATGAACCTAACTATTGCATCATATAGATATTGTCCTTATGGAACCAACCCTGGTTTTGAATCTTTGGACCCATCATTGACTTCACATCATAGGTCTCCACTAAACAGAGTTGCAGTTTTTTGGGATTTGGATAACAAACCACCAAAATCATTTCCCCCTTATGATGCAACAATTCGGCTAAAGAAGGCGGCTGAATCATTCGGGGTTGTTCGCTACATGGTAGCTTATGCCAATCGTCACGCTTTTACTCATGTTCCTCGAGAAGTGAGGGAACAAAGGAAAGAGAGGAAACAATTGAATAAGTTGGAAAATATTGGCGTCCTTAAACCAGCTGAACCATACATTTGTAGAGTTTGTGGTAGAAGATTTTATAATAACGAGAAACTCATTAACCATTTTAAGCAAATTCATGAGCGTGAACATACGAAAATGTTGAATCAGATAGAGTCGGCGAGAGGTTCAAGGAGGGTGAAGCTGGTGGGCAAGTATTCTATGAAGATGGACAAGTATAAGAATGCTGCAAGGGACGTTTTGACCCCAAAAGTCGGGTACGGGTTGGCGGATGAGCTAAAACGGGCCGGATTTTGTGTCAATATGGTATCTGACAAACCACAAGCTGCGGATTTTGCGCTGAGGATTCACATGGCGGATATAATGGATAAGAGAAGGGTTGAGTGTGTGATTCTTGTTTCTGATGATAAGGATTTTGTGGAGGTTTTAAATGAAGCAAAATTGAGGTGTTTGAGGACTGTTGTTGTCGGTGATACCAATGATGGGGCTCTCAAAAGGATTGCTGACGCCTCGTATTCCTGGCAAGAAATCATGATGGGGAAGGCTAAGAAAGAGGCCGTATCGGTTGTGGGGCGGTGGAAGGACCGTGATGTCTTGAAAAGATTAGAGTGGACTTACAACCCAGAAAGGGAGAGAAAATTGTATGATTTTCGTAATGATACTGATTTTGAGAGCGAGAGCTCGGATGTTGAAGGTTTTCTTTCTGAGGAAGATGATGGTGTTCAGAAGAATGATAGTGCTTGGTGGAAACTTGAACCTGAGTCTGTTGTTGAATCTCGATGA

Network for GWHGAAZE028451

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0267	Transcription factor SET family Transcription factor SET Transcription factor C3H family Transcription factor C3H Transcription factor C2H2 family Transcription factor C2H2 GO:0018024 histone-lysine N-methyltransferase activity GOslim:molecular_function GO:0005634 nucleus GOslim:cellular_component

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01936.19	NYN	186	266	1.60E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.073
	SRR3591706	second leaf	9.563
	SRR3591707	mature leaf	12.572
	SRR3591708	Shoot apex	17.705
	SRR3591709	Stem	19.460
	SRR3591710	White floral bud	14.309
	SRR3591711	White flower	17.818
	SRR3591712	Green floral bud	17.021
	SRR3591713	Yellow flower	12.770
SRP173429	SRR8316895	Juvenile bud stage	12.028
	SRR8316896	Juvenile bud stage	21.195
	SRR8316897	Juvenile bud stage	10.149
	SRR8316894	Third green stage	8.052
	SRR8316900	Third green stage	19.718
	SRR8316901	Third green stage	19.814
	SRR8316898	Complete white stage	5.835
	SRR8316899	Complete white stage	23.803
	SRR8316903	Complete white stage	15.354
	SRR8316902	Silver flowering stage	11.915
	SRR8316904	Silver flowering stage	14.391
	SRR8316905	Silver flowering stage	7.571
	SRR8316906	Gold flowering stage	21.382
	SRR8316907	Gold flowering stage	22.555
	SRR8316908	Gold flowering stage	16.476
SRP132670	SRR6706286	Control	14.701
	SRR6706287	Light intensity 50%	15.732
	SRR6706288	Light intensity 20%	16.336
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.092
	CNS0095593	Slightly white alabastrum(diploid) 2	20.294
	CNS0095594	Slightly white alabastrum(diploid) 3	19.028
	CNS0095595	Whole white alabastrum(diploid) 2	12.999
	CNS0095596	Whole white alabastrum(diploid) 3	11.572
	CNS0095597	Whole white alabastrum(diploid) 4	15.276
	CNS0095598	Silvery flower (diploied) 1	16.901
	CNS0095599	Silvery flower (diploied) 2	14.706
	CNS0095600	Silvery flower (diploied) 3	14.264
	CNS0095601	Golden flower (diploid) 1	17.202
	CNS0095602	Golden flower (diploid) 2	13.129
	CNS0095603	Golden flower (diploid) 3	11.524
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.470
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.088
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.408
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.854
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.861
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.038
	CNS0095610	Silvery flower (tetraploid) 1	20.334
	CNS0095611	Silvery flower (tetraploid) 2	16.079
	CNS0095612	Silvery flower (tetraploid) 3	15.107
	CNS0095613	Golden flower (tetraploid) 1	14.912
	CNS0095614	Golden flower (tetraploid) 2	16.004
	CNS0095615	Golden flower (tetraploid) 3	13.326
CRA001975	CRR073297	Stem 1	14.364
	CRR073298	Stem 2	13.097
	CRR073299	Stem 3	5.310
	CRR073300	Leaf 1	16.018
	CRR073301	Leaf 2	15.137
	CRR073302	Leaf 3	6.655
	CRR073303	Juvenile bud 1	8.567
	CRR073304	Juvenile bud 2	4.105
	CRR073305	Juvenile bud 3	7.981
	CRR073306	Third green 1	3.548
	CRR073307	Third green 2	3.950
	CRR073308	Third green 3	4.026
	CRR073309	Second white 1	2.725
	CRR073310	Second white 2	5.053
	CRR073311	Second white 3	5.432
	CRR073312	Silver flowering 1	4.336
	CRR073313	Silver flowering 2	4.129
	CRR073314	Silver flowering 3	4.244
	CRR073315	Gold flowering 1	7.380
	CRR073316	Gold flowering 2	7.057
	CRR073317	Gold flowering 3	3.740
	CRR073318	Tawny withering 1	9.440
	CRR073319	Tawny withering 2	12.652
	CRR073320	Tawny withering 3	9.261