Gene detail

Detail information of GWHGAAZE028450

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281133.1	0	PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 [Vitis vinifera]
COG	YP_004775215.1	3E-56	RHS repeat-associated core domain-containing protein
Swissprot	tr\|O82318\|Y2579_ARATH	0	Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 (Precursor)
trEMBL	tr\|D7SU88\|D7SU88_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20837.3}
TAIR10	AT2G25790.1	0	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	57127587	57131032	+
GWHAAZE00000008	mRNA	57127587	57131032	+
GWHAAZE00000008	exon	57127587	57128361	+
GWHAAZE00000008	exon	57128451	57130075	+
GWHAAZE00000008	exon	57130670	57131032	+
GWHAAZE00000008	CDS	57127587	57128361	+
GWHAAZE00000008	CDS	57128451	57130075	+
GWHAAZE00000008	CDS	57130670	57131032	+

Transcript Sequence
>GWHTAAZE028484 ATGGCCAAGAAAAGAGCGAAAACACTAAAAGATTTGTTCGTGCTCATCTTTTTGGTTTTATTTTCCTTTCTCTTGCCATGCCCATGCCAAAGTTCCGAGTTTGAGCTCTTATTGTCCATCAAAAGTTCCATTAATGACCCTTTAAGGTTTCTTTGGAATTGGAACTCTTCTCTTCCCTTCTGCCAGTGGAATGGTATCAAGTGCGACAATTCTTCCCACGTGGCCAAAATCGAGCTCTTGGGGAAAAATATTTCTGGAAAATTTTCGGAATCAGTTTTCCATTTTCCATATGTTGAATCGGTTGATTTCTCGAATAATCAGCTCTTTGGAGGAATTCCAAGCAACTTTTCCTTTTGTTTTTCGCTTCGTTATCTCAATCTAAGCAACAATAATCTCACTGGCCCATTGCCTAGAGGTTCGATTTCTAGGCTCACGACTTTGGATCTCTCCAACAACATGCTTTCGGGGAAAATTCCGGAGGAAATTGGATTCTTTTCGGGCCTCCATTTTCTTGATCTAGGTGGAAATTCCTTGGTGGGAGGAATTCCAAATTCCCTAGCCAATTTGTCAAGTTTGCAAGTCCTGACTCTAGCTTCGAACCAATTATCCGGTGAAATCCCACGTGAATTAGGCCTAATGAAGAGCTTGACGTGGATTTACATGGGTTACAACAATTTCTCTGGTGGAATTCCAAAGGAAATCGGTGAGTTAACTTCTTTGAATCATCTTAATCTCGCATGTAACAATCTCACCGGTGAAATCCCACCATCTATTGTATCACTTGATTTAAGTGATAACTTTTTGTCGGGAGAAATTCCCAAAGCCATAAGCCAATTGCGAAATCTGGAAATTTTCCATTTGTTTTCCAACAAATTTTCCGGTGAAATTCCCACTGCCCTGACTTTTTTGCCGGGTCTTCAAATCCTTCAATTATGGTCAAACCGATTGACTGGCGAGATTCCGAAAAACCTTGGGAAACAAAATAATCTCACTCTACTAGACCTTTCTACCAATAACCTTACTGGAAAAATCCCTGAAACACTATGTGAATCTCGCCGTCTTTTCAAGCTCATCCTTTTTTCAAATTCTCTCAAAGGAGAATTGCCAAAGAGTTTGAGCCTATGCACAAGTTTACGACGTGTACGCCTTCAAAACAATCAAATCTCCGGTGAACTGCCACCGGCATTCAGCAAACTACCCCTGGTGTACTTTCTTGATATCTCCAACAACAATCTCTCAGGCAAGATTAGTGGGCAGAAATGGGATATGCCGGAACTTGAGCTACTAAATTTATCAAGAAACAAATTTTTCGGGGAATTGCCGGATTCGTTTGGGAGTAACAAACTCGAAAATTTGGACATGTCGGAAAATGGGTTTTCTAGCAAAATCTCTCCCGGTTTTGGGAATCTTTCGGAGCTAATGGAATTGAAATTGAGAGGAAACAAGCTTTCTGGTGAAATCCCAAATGAACTATCTTTATGCAAGAAGCTTGTAAGTGTAGACCTTAGCAATAATTCGCTCACTGGAAAAATTCCTACTAGTTTTTCCCAATTGCCTGTTCTTGGTGTTCTTGATTTGTCGATAAACCAATTATCTGGCACAATTCCGAAAAATTTAGGGGAAGTGGAATCACTTGTTCAAGTAAACATATCTCACAACCATTTCCATGGAAATTTACCCTCTACCGGAGCTTTTCTTGCCATTAACTCTAGTGCAATCTCTGGCAATGAATTTTGTGGTGGCAATTTTCCTCCATGCAGAGGAATACAAATCCCTATTTGGTTGATTTTCTTCACTTGTTTACTCATCACTTCGGTCGTGCTGGTCCTTGTATATTTTTCCAACGTTTACATTCGACAAAGAAAGGAATTAGAAGTCAAAAGAGAGGAAAATGAAAACGAAAATTGGGAATTACAAAGTTTTCGTTCCAATTATTTGAAATATATCACCATCAACGATATTTTATCATCGAAAAGAGATGAAAATTTCATTTCTAGAGAAAAGGGCGCGTTTTTCTTTAAAGCAAAGTCCACCACCAACACCATGCAATTTTTGGTACAAGAATTGAATGATATGAATTCACTTCCACCAACTTTTTGGCAAGAAGTGATTGAACATGGGAAGATTGGGCATGAAAATATCATCAAACTCGTCGCGACTTGCCGGTCCAAAAAGGGAGGGTTTTTGGTGTACGAATGGATTGAAGGGAAGAATTTGAGGGAAGCGATTCGAGGGTTATCCTGGGAGAAAAGAAAGAGAATAGCTTGTGGGATTGCGAGGGCTCTATGTTACTTGCATTGTTCTTGTTCGCCGCGTGTTCTTGTGGGTCCCCACTTGCCAGAAAATATCACCGTCGACGGCAAATCTGAGGCTCGCCTCAGATTGAGTCTTCCCCGGCCGACGAAAAAAACAAAAGAAATAAGTGAGAAAAGTGATATATATGGATTTGGTCTCCTCTTAATTGAAATACTTACCGGAAAATCTCCGGCCGCCGCCGAGTTTGGGGTCCACGAAAGCATTGTGGAGTGGGCCCGCTATTGCTACTCTGACTGTCATCTCGACACGTGGATAGATCCAACGATCAGGGGACATGCATCAAATAATGAGAACGACATCGTTTCAACTATGAATCTTGCCCTTCAATGTACCGCTGTGGACCCCAATGCTAGACCATGTGCAAAGGAAATAGTCAAAACCCTAGATTCATCAATGGGGTCTACCTTTTGTGTTTTAGGTGCCAATTTTTCTTCCACTATATATTAA

Network for GWHGAAZE028450

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	32	69	6.60E-08
PF00560.34	LRR_1	121	138	0.48
PF00560.34	LRR_1	143	164	0.91
PF00560.34	LRR_1	168	189	0.84
PF13516.7	LRR_6	238	253	0.86
PF13855.7	LRR_8	304	364	1.40E-06
PF13855.7	LRR_8	377	436	7.00E-07
PF13855.7	LRR_8	496	555	1.90E-07
PF07714.18	PK_Tyr_Ser-Thr	803	900	8.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_Singleton

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.103
	SRR3591706	second leaf	0.104
	SRR3591707	mature leaf	0.362
	SRR3591708	Shoot apex	1.345
	SRR3591709	Stem	2.758
	SRR3591710	White floral bud	0.830
	SRR3591711	White flower	0.802
	SRR3591712	Green floral bud	0.299
	SRR3591713	Yellow flower	0.309
SRP173429	SRR8316895	Juvenile bud stage	0.462
	SRR8316896	Juvenile bud stage	0.318
	SRR8316897	Juvenile bud stage	0.117
	SRR8316894	Third green stage	0.374
	SRR8316900	Third green stage	0.247
	SRR8316901	Third green stage	0.452
	SRR8316898	Complete white stage	0.941
	SRR8316899	Complete white stage	4.118
	SRR8316903	Complete white stage	1.996
	SRR8316902	Silver flowering stage	0.485
	SRR8316904	Silver flowering stage	0.657
	SRR8316905	Silver flowering stage	0.235
	SRR8316906	Gold flowering stage	0.066
	SRR8316907	Gold flowering stage	0.158
	SRR8316908	Gold flowering stage	0.028
SRP132670	SRR6706286	Control	0.612
	SRR6706287	Light intensity 50%	0.886
	SRR6706288	Light intensity 20%	0.880
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.279
	CNS0095593	Slightly white alabastrum(diploid) 2	0.420
	CNS0095594	Slightly white alabastrum(diploid) 3	0.338
	CNS0095595	Whole white alabastrum(diploid) 2	0.211
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.197
	CNS0095598	Silvery flower (diploied) 1	0.475
	CNS0095599	Silvery flower (diploied) 2	0.178
	CNS0095600	Silvery flower (diploied) 3	0.216
	CNS0095601	Golden flower (diploid) 1	0.103
	CNS0095602	Golden flower (diploid) 2	0.289
	CNS0095603	Golden flower (diploid) 3	0.223
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.996
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.288
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.025
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.616
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.500
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.047
	CNS0095610	Silvery flower (tetraploid) 1	0.107
	CNS0095611	Silvery flower (tetraploid) 2	0.253
	CNS0095612	Silvery flower (tetraploid) 3	0.150
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.029
	CNS0095615	Golden flower (tetraploid) 3	0.027
CRA001975	CRR073297	Stem 1	0.229
	CRR073298	Stem 2	0.635
	CRR073299	Stem 3	0.581
	CRR073300	Leaf 1	1.164
	CRR073301	Leaf 2	1.418
	CRR073302	Leaf 3	0.745
	CRR073303	Juvenile bud 1	2.313
	CRR073304	Juvenile bud 2	1.568
	CRR073305	Juvenile bud 3	4.491
	CRR073306	Third green 1	0.645
	CRR073307	Third green 2	1.245
	CRR073308	Third green 3	1.144
	CRR073309	Second white 1	0.067
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.125
	CRR073313	Silver flowering 2	0.063
	CRR073314	Silver flowering 3	0.054
	CRR073315	Gold flowering 1	0.233
	CRR073316	Gold flowering 2	0.351
	CRR073317	Gold flowering 3	0.363
	CRR073318	Tawny withering 1	7.953
	CRR073319	Tawny withering 2	6.510
	CRR073320	Tawny withering 3	9.862