Gene detail

Detail information of GWHGAAZE028445

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009768912.1	0	PREDICTED: cell division control protein 2 homolog A [Nicotiana sylvestris]
COG	YP_005004992.1	2E-27	phosphotransferase enzyme family protein
Swissprot	tr\|Q38772\|CDC2A_ANTMA	0	Cell division control protein 2 homolog A
trEMBL	tr\|Q9FUR4\|Q9FUR4_TOBAC	0	Cyclin-dependent kinase A:4 {ECO:0000313\|EMBL:AAG01534.1} (Fragment)
TAIR10	AT3G48750.1	1E-148	cell division control 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	56899549	56906374	+
GWHAAZE00000008	mRNA	56899549	56906374	+
GWHAAZE00000008	exon	56899549	56899733	+
GWHAAZE00000008	exon	56902412	56902532	+
GWHAAZE00000008	exon	56903512	56903685	+
GWHAAZE00000008	exon	56904594	56904757	+
GWHAAZE00000008	exon	56905383	56905470	+
GWHAAZE00000008	exon	56905578	56905631	+
GWHAAZE00000008	exon	56906285	56906374	+
GWHAAZE00000008	CDS	56899549	56899733	+
GWHAAZE00000008	CDS	56902412	56902532	+
GWHAAZE00000008	CDS	56903512	56903685	+
GWHAAZE00000008	CDS	56904594	56904757	+
GWHAAZE00000008	CDS	56905383	56905470	+
GWHAAZE00000008	CDS	56905578	56905631	+
GWHAAZE00000008	CDS	56906285	56906374	+

Transcript Sequence
>GWHTAAZE028479 TATGAGAAGGTTGAGAAGATAGGTGAAGGAACGTACGGGGTGGTCTATAAGGCTCGGGACCTTGCGAACAATGAAACTATTGCTTTGAAGAAGATCCGTCTGGAGCAGGAAGATGAGGGTGTGCCGAGTACAGCTATTAGAGAAATTTCTCTCTTGAAAGAGATGCAGCATGCAAACATTGTGAGGTTACAAGATGTTGTTCACAGCGAGAAGCGATTGTATCTGGTTTTTGAATATCTGGATCTGGATCTGAAGAAGCACATGGATTCATCCCCGGAATTTGGAAAAGACCCACATATTGTAAAAAAGTTTCTGTTTCAAATACTTCGGGGTATAGCTTATTGTCATTCTCATAGAGTTCTTCATCGAGATCTGAAGCCTCAGAACTTGCTGATAGATCGCCGTACCAATGCTCTAAAGCTTGCTGACTTTGGATTGGCCAGAGCTTTTGCTATTCCTGTTCGAACTTTTACTCATGAGGTGGTGACGCTATGGTATAGAGCACCGGAAATACTCCTTGGATCTCGCCACTACTCTACTCCTGTTGATGTTTGGTCAGTGGGTTGTATCTTCGCTGAGATGCTGAACCGTCGGCCACTCTTTCCTGGTGACTCCGAGATTGATGAATTGTTTAGGATTTTCAGAATCATGGGTACTCCAAATGAAGATTCATGGCCTGGAGTGACGTCTCTGCCCGATTTTAAATCTGCCTTCCCAAAGTGGCCTGCTAAGGAGTTGGCAACCTTAGTCCCTAATCTTGATTCCACTGGTCTTGATCTCCTCACTAAAATGCTCCGCTTGGATCCTAGCAGAAGAATTACAGCAAGGAGCGCCCTTGAGCACGAGTACTTCAAGGATATTGGCTCTGTGCCCTAA

Network for GWHGAAZE028445

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	1	284	1.30E-79

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-Pl

KEGG pathway

KO	Enzyme	pathway	mapID
K02206	CDK2	FoxO signaling pathway	map04068
		PI3K-Akt signaling pathway	map04151
		Cell cycle	map04110
		Oocyte meiosis	map04114
		p53 signaling pathway	map04115
		Cellular senescence	map04218
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.295
	SRR3591706	second leaf	27.876
	SRR3591707	mature leaf	8.164
	SRR3591708	Shoot apex	63.031
	SRR3591709	Stem	34.880
	SRR3591710	White floral bud	23.063
	SRR3591711	White flower	22.326
	SRR3591712	Green floral bud	40.871
	SRR3591713	Yellow flower	6.533
SRP173429	SRR8316895	Juvenile bud stage	35.369
	SRR8316896	Juvenile bud stage	45.577
	SRR8316897	Juvenile bud stage	18.112
	SRR8316894	Third green stage	16.371
	SRR8316900	Third green stage	49.733
	SRR8316901	Third green stage	40.673
	SRR8316898	Complete white stage	12.314
	SRR8316899	Complete white stage	61.105
	SRR8316903	Complete white stage	19.359
	SRR8316902	Silver flowering stage	6.773
	SRR8316904	Silver flowering stage	8.913
	SRR8316905	Silver flowering stage	3.757
	SRR8316906	Gold flowering stage	9.260
	SRR8316907	Gold flowering stage	8.530
	SRR8316908	Gold flowering stage	10.209
SRP132670	SRR6706286	Control	31.163
	SRR6706287	Light intensity 50%	30.402
	SRR6706288	Light intensity 20%	36.446
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.547
	CNS0095593	Slightly white alabastrum(diploid) 2	32.773
	CNS0095594	Slightly white alabastrum(diploid) 3	26.563
	CNS0095595	Whole white alabastrum(diploid) 2	25.167
	CNS0095596	Whole white alabastrum(diploid) 3	26.706
	CNS0095597	Whole white alabastrum(diploid) 4	16.468
	CNS0095598	Silvery flower (diploied) 1	26.471
	CNS0095599	Silvery flower (diploied) 2	21.200
	CNS0095600	Silvery flower (diploied) 3	16.147
	CNS0095601	Golden flower (diploid) 1	27.798
	CNS0095602	Golden flower (diploid) 2	14.801
	CNS0095603	Golden flower (diploid) 3	17.737
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.535
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.478
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.473
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.045
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.995
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.746
	CNS0095610	Silvery flower (tetraploid) 1	7.607
	CNS0095611	Silvery flower (tetraploid) 2	11.457
	CNS0095612	Silvery flower (tetraploid) 3	9.060
	CNS0095613	Golden flower (tetraploid) 1	1.248
	CNS0095614	Golden flower (tetraploid) 2	2.213
	CNS0095615	Golden flower (tetraploid) 3	0.448
CRA001975	CRR073297	Stem 1	65.264
	CRR073298	Stem 2	57.743
	CRR073299	Stem 3	67.073
	CRR073300	Leaf 1	55.401
	CRR073301	Leaf 2	53.396
	CRR073302	Leaf 3	55.821
	CRR073303	Juvenile bud 1	59.602
	CRR073304	Juvenile bud 2	38.518
	CRR073305	Juvenile bud 3	59.661
	CRR073306	Third green 1	10.142
	CRR073307	Third green 2	9.601
	CRR073308	Third green 3	9.557
	CRR073309	Second white 1	7.999
	CRR073310	Second white 2	3.684
	CRR073311	Second white 3	3.003
	CRR073312	Silver flowering 1	2.154
	CRR073313	Silver flowering 2	2.560
	CRR073314	Silver flowering 3	1.986
	CRR073315	Gold flowering 1	16.613
	CRR073316	Gold flowering 2	19.062
	CRR073317	Gold flowering 3	17.324
	CRR073318	Tawny withering 1	63.160
	CRR073319	Tawny withering 2	51.134
	CRR073320	Tawny withering 3	68.182