Gene detail

Detail information of GWHGAAZE028439

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002516494.1	0	Serine/threonine-protein kinase, putative [Ricinus communis]
COG	YP_006921214.1	3E-33	serine/threonine-protein kinase Sps
Swissprot	tr\|Q9M077\|AUR1_ARATH	0	Serine/threonine-protein kinase Aurora-1
trEMBL	tr\|B9RRX5\|B9RRX5_RICCO	0	Serine/threonine-protein kinase, putative {ECO:0000313\|EMBL:EEF45835.1}
TAIR10	AT4G32830.1	1E-154	ataurora1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	56592684	56604614	+
GWHAAZE00000008	mRNA	56592684	56604614	+
GWHAAZE00000008	exon	56592684	56592719	+
GWHAAZE00000008	exon	56594237	56594353	+
GWHAAZE00000008	exon	56595272	56595418	+
GWHAAZE00000008	exon	56595513	56595608	+
GWHAAZE00000008	exon	56596054	56596149	+
GWHAAZE00000008	exon	56596253	56596349	+
GWHAAZE00000008	exon	56597166	56597283	+
GWHAAZE00000008	exon	56603982	56604054	+
GWHAAZE00000008	exon	56604355	56604614	+
GWHAAZE00000008	CDS	56592684	56592719	+
GWHAAZE00000008	CDS	56594237	56594353	+
GWHAAZE00000008	CDS	56595272	56595418	+
GWHAAZE00000008	CDS	56595513	56595608	+
GWHAAZE00000008	CDS	56596054	56596149	+
GWHAAZE00000008	CDS	56596253	56596349	+
GWHAAZE00000008	CDS	56597166	56597283	+
GWHAAZE00000008	CDS	56603982	56604054	+
GWHAAZE00000008	CDS	56604355	56604456	+
GWHAAZE00000008	three_prime_UTR	56604457	56604614	+

Transcript Sequence
>GWHTAAZE028473 ATGGCAATCGCACCAGAGATGCAGCTGCACGATAAGGCTTCTTCAGAGGTTGCAGCATCAGAGAAAAGAAGATGGACGCTCAATGACTTTGACATTGGAAAGCCTCTTGGAAGGGGAAAATTTGGTCATGTCTATCTAGCAAGAGAGAAAAGGAGCAATCATATAGTGGCACTAAAGGTGCTGTTTAAGAGCCAGCTGAAACAGTCTCAGGTGGAGCATCAACTTCGCCGCGAAGTTGAAATTCAAAGCCATCTCCGTCACCCTAATATTCTACGTCTTTATGGCTACTTCTACGATCAGAAACGAGTTTATTTGATTTTGGAGTATGCTGCCAAGGGTGAACTATACAAGGAGCTACAGAAATGCAAATACTTCAGTGAAACGCGGGCTGCTACGTATGTTGCATCTCTAGCTCGGGCACTTATATATTGCCATGGAAAGCACGTTATACACAGAGATATCAAGCCCGAGAATCTTTTAGTTGGTGCACAGGGAGAACTTAAGATTGCAGACTTTGGTTGGTCAGTGCACACATTCAACCGCAGGCGGACCATGTGTGGCACTCTTGATTATCTTCCACCTGAGATGGTGGAAAGTGTGGAGCACGACGCCAGTGTGGACAATTGGAGCCTTGGCATCCTATGCTACGAGTTTTTGTATGGTGTCCCTCCCTTTGAAGCAAAGGAACACTCCGATACATATAGAAGGATTGTGCAAGTGGATTTAAAGTTTCCTCCAGAGCCTTTAGTCTCCTCAGCTGCAAAGGACCTCATTAGTCAGATGCTTGTAAAGGAGACATCGCAACGCTTGCCGCTACACAAGCTCCTGGAGCATCCATGGATAGTTCAGAATGCAGATCCGACTGGAGTATATAAGGGATAATAAAAAAGGTTGTATGTAGACAAAAGTGTTTACCGTTTTATGTAAAATTACCATAACAAGAATGATGCTTGACTATTTTTCTTTAATACCAAAAATACTCTTGCAAGTATTTCCAGCTAAAACTTAGAATCTTAAAATGAACACTCTAAAGTTGGAAA

Network for GWHGAAZE028439

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	32	281	5.70E-72

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	Aur

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.872
	SRR3591706	second leaf	1.673
	SRR3591707	mature leaf	0.590
	SRR3591708	Shoot apex	9.465
	SRR3591709	Stem	2.139
	SRR3591710	White floral bud	2.519
	SRR3591711	White flower	0.415
	SRR3591712	Green floral bud	2.994
	SRR3591713	Yellow flower	0.453
SRP173429	SRR8316895	Juvenile bud stage	5.371
	SRR8316896	Juvenile bud stage	7.210
	SRR8316897	Juvenile bud stage	1.670
	SRR8316894	Third green stage	1.580
	SRR8316900	Third green stage	6.801
	SRR8316901	Third green stage	7.500
	SRR8316898	Complete white stage	0.368
	SRR8316899	Complete white stage	3.411
	SRR8316903	Complete white stage	0.642
	SRR8316902	Silver flowering stage	0.212
	SRR8316904	Silver flowering stage	0.004
	SRR8316905	Silver flowering stage	0.108
	SRR8316906	Gold flowering stage	0.386
	SRR8316907	Gold flowering stage	0.188
	SRR8316908	Gold flowering stage	0.327
SRP132670	SRR6706286	Control	5.439
	SRR6706287	Light intensity 50%	6.014
	SRR6706288	Light intensity 20%	6.326
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.710
	CNS0095593	Slightly white alabastrum(diploid) 2	7.369
	CNS0095594	Slightly white alabastrum(diploid) 3	12.107
	CNS0095595	Whole white alabastrum(diploid) 2	9.731
	CNS0095596	Whole white alabastrum(diploid) 3	10.576
	CNS0095597	Whole white alabastrum(diploid) 4	12.273
	CNS0095598	Silvery flower (diploied) 1	3.269
	CNS0095599	Silvery flower (diploied) 2	7.323
	CNS0095600	Silvery flower (diploied) 3	1.701
	CNS0095601	Golden flower (diploid) 1	3.793
	CNS0095602	Golden flower (diploid) 2	2.698
	CNS0095603	Golden flower (diploid) 3	2.473
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.936
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.053
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.620
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.183
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.627
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.692
	CNS0095610	Silvery flower (tetraploid) 1	1.328
	CNS0095611	Silvery flower (tetraploid) 2	1.900
	CNS0095612	Silvery flower (tetraploid) 3	1.895
	CNS0095613	Golden flower (tetraploid) 1	1.315
	CNS0095614	Golden flower (tetraploid) 2	0.887
	CNS0095615	Golden flower (tetraploid) 3	0.200
CRA001975	CRR073297	Stem 1	5.277
	CRR073298	Stem 2	4.317
	CRR073299	Stem 3	5.954
	CRR073300	Leaf 1	4.751
	CRR073301	Leaf 2	5.532
	CRR073302	Leaf 3	4.310
	CRR073303	Juvenile bud 1	3.973
	CRR073304	Juvenile bud 2	3.222
	CRR073305	Juvenile bud 3	1.165
	CRR073306	Third green 1	1.034
	CRR073307	Third green 2	1.341
	CRR073308	Third green 3	0.598
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.109
	CRR073311	Second white 3	0.334
	CRR073312	Silver flowering 1	0.387
	CRR073313	Silver flowering 2	0.748
	CRR073314	Silver flowering 3	0.274
	CRR073315	Gold flowering 1	2.844
	CRR073316	Gold flowering 2	2.201
	CRR073317	Gold flowering 3	1.253
	CRR073318	Tawny withering 1	4.941
	CRR073319	Tawny withering 2	4.103
	CRR073320	Tawny withering 3	5.463