Gene detail

Detail information of GWHGAAZE028431

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP41243.1	0	hypothetical protein JCGZ_15650 [Jatropha curcas]
COG	YP_007567780.1	7E-25	RalF protein, translocated into host cells by the Dot/Icm system
Swissprot	tr\|Q42510\|GNOM_ARATH	0	ARF guanine-nucleotide exchange factor GNOM
trEMBL	tr\|A0A067L230\|A0A067L230_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP41243.1}
TAIR10	AT1G13980.2	0	sec7 domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	55975193	55980250	-
GWHAAZE00000008	mRNA	55975193	55980250	-
GWHAAZE00000008	exon	55975193	55975942	-
GWHAAZE00000008	exon	55976011	55976942	-
GWHAAZE00000008	exon	55977016	55978810	-
GWHAAZE00000008	exon	55979549	55980250	-
GWHAAZE00000008	CDS	55979549	55980250	-
GWHAAZE00000008	CDS	55977016	55978810	-
GWHAAZE00000008	CDS	55976011	55976942	-
GWHAAZE00000008	CDS	55975193	55975942	-

Transcript Sequence
>GWHTAAZE028465 ATGAAAGCCATGGGGTGCCTAAATCAGCACTCCAACATCAATACATTGGCTCTGGAACTCAAAAACTGTTCCAATAGGCCTTCCGGAGGCGCTTTAGCGCTTATGGTGAATTCAGAAATAGGTGCAGTTTTGGCTGTTATGAGGAGAAATGTAAGATGGGGGGTCCGTTATATGGCCGATGATGATCAACTCGAACACTCTTTGATCCAATCCTTCAAGGAATTACGCAGAAAAATATTCTCGTGGCAACATCAGTGGCATTCAATTAACCCAGTCGTGTACCTCCAGCCGTTTTTGGACGTGATTCAATCTGATGAAACTGGTGCACCAATCACCGGTGTTGCTTTATCATCTGTTTACAAATTCTTAACATTAGAGATATTTGATTTAGATACTGTGAATGTGGACGATGCTTTGCATTTGATAGTTGATGCCGTTACAAGTTGTCGTTTTGAGGTCACTGATCCAGCTTCTGAAGAAGTCGTGCTGATGAAGATACTTCAGGTTCTTTTGGCCTGCATGAAGAATAAGGCATCGCTTAAGTTGAGTAATCAGCATGTATGCAATATAGTGAATACTTGCTTTCGTGTTGTTCATCAAGCAAGCTCTAAAGGTGAATTGTTGCAAAGGATCGCACGCCATACGATGCATGAACTAATTAGGTGTATTTTTTTGCACCTGCCTGACATTGATAATACAGAGGTCAGTGTGCGAGATGCAGATCACACTTCTGGAAGCAAACAACAAAACAATGGCAATGCTAGTTCAGAACATGATGACAAGCCTTATTCTGTTGGTGTTTCTTTGAATGTTTCAACAGATACATTTGAAGGGGATGGAAATATGATAGAGGTTGGTCAAGGGAAAGAGGCTGCTCAGAGTGGAGACCATCTTATGAAGGAGCCGTATGGGGTCCCGTGCATGGTGGAAATATTTCACTTCTTATGTTCCCTTTTGAATATTATTGAGGAAAACAGTGGAATTGGTCCGAGATCAAACCCTATAGCATATGATGAAGATGTCCCTCTATTCGCATTAGGGTTAATCAATTCGGCCATTGAATTGGGCGGGGCCTCATTTGCTCATCACCCAAAACTACTGGCTTTGATACAAGATGAACTTTTCCGTCACTTGATGCAGTTCGGTTTGTCAATGAGTCCACTAATCCTTTCCACAGTATGTAGCATTGTTCTTAATCTGTATTATCATTTGCGTACAAAGCTTAAACTACAGCTCGAAGCTTTCTTCTCTTGTGTCCTTTTGAGAATCGCACAAAGCAAGCATGGAGCTTCGTATCAACAGCAGGAGGTTGCTATGGAGACACTTGTTGACCTTTGTAGACAACAGACGTTTATGGCTGAGATGTATGTGAACTTCGATTGTGATATATCTTGCAATAATGTATTTGAAGAACTCGCCAATTTGTTATCGAAAAGCGCATTCCCGGTGAACAGTCCTCTATCTACAATGCACATTCTTGCTCTCGATGGCCTAATCGCCATGATCCAGGGCATGGCCGAAAGAACATTCGGTGAGTTGCCAGCTTCGCAAAATCTTGAAGATTACCAAGCTTTTTGGACCGTGAAATGCGACAACTACGACGACCCTAGTCAGTGGGTCCCATTTGCTCATAAGATGAAGTTCATCAAGAGGAAATTGATGATTGGAGCTGATCACTTCAACCGGGCGCCTATGAAAGGTCTTGAATTTCTCCAAGGAATGCATCTTTTGCCCGATAAACTCGACTCGCAAAGTGTAGCTTGCTTTCTTCGGTATACAACCGGGTTAGATAAGAATCTTGTTGGGGATTTTCTTGGAAATCATGATGAATTTTGTATTGATGTGCTTCACGAATTTGCTCAGACTTTCGATTTTTCCAACATGAATTTGGACACTGCATTGCGGGTTTTCTTGGAGACTTTTAAATTGCCTGGAGAGTCGCAAAAGATACAAAGGGTTCTTGAGGCCTTTGCTGAAAGATATTATGAACAGTCACCACATATCTTGGCCAACAAAGATGCTGCTCTTTTACTGTCGTATTCATTAATAATGCTTAACACAGATCAACACAATGCTCAGGTGAAGAAGAAGATGACAGAGGAAGATTTTATACGTAACAATCGGCACATAAACGGTGGGAACGATCTCCCTCGCGATTACTTATGTGAGCTTTACCACTCAATCTGCATGAATGAGATCCGTATGACCCCCGAGACAGGTGCAGGTTTTCCAGTGATGACATCAAGCCATTGGATCGGTCTGAAGCACAAATCGAAACAATCCGCTCCGTTCATTGTCTGCGATTCGAGAGAGAATCTTGATTATGATATGTTTAGAATTCTGTCGAGTCCCACTATTGCTGCGCTCTCTGTGGTTTACGATCACGTGGAGCAGGAAGATGTTTTACAAACATGCATTGACGGGTTCTTAGCCGTTGCTAAAATCGCAGCTCGCTATAATCTTGATGATGTTTTGGATGATTTGGTCGTATCTCTTTCTAGAATGGCGACGGTGGCAGTTTTCACCATAGCAAATGGATATGGTGATTGTGTACGTGGTGGTTGGAAAAATATTCTTGATTGCATTTTAAGCTTGCACCGGCTAGGCCTTGTTCCTACCCGTTTGGCCAGTGATGCAACTGATGAGTTGGACCCCGCACCTGAACTTGAGCGAGGGCGAGCTGCTGCAGCCCCACCGGTTTCCCATAAGCCGACACTGATCACTTCTAAAAGGTCATCTAGTTTGATGGGTCGATTTAGCCAATTCTTGTACCTTGATGCAGACGAGCCAGCCCCACAACCTACTGAAGAACAGCTTTTAGCTCATCAACGGTCTCTTCAGGCAGTTCAAAATTGCCACATTGACAATATTTTTACGGAAAGTAAGTTTTTGCAAGCCGAGTCCCTGTCGCAGCTATCACGGGCCCTCATCTTAGCTGCAGGCCGGTCCTACAAGGGGAATAATTCCGTCGAAAATGAAGACATTGCAGTTTTTTGCTTGGAGTTGCTGATTGCAGTGACGTTAAATAACCGGGATAGAATTATGCTTCTTTGGCAGGGCGTTTATGAGCACATAGCCAACGTTGTACAATCAGCTGTAATGCCTTGTACCTTGGTTGAGAAGGCTGTGTTTGGCCTCCTACGTATATGCCAACGATTACTCCCTTACAAGGAGAACTTGACCGACGAGCTACTCAAGTCTTTACAACTGGTTCTAAAACTCGATGCTCGTGTTGCTGATGCGTACTGTGAGCAAATCACAAATGAAGTTATGCGCCTTGTTAAGGCGAACGCAATGCAGATCCGATCCCATGCAGGGTGGCGCACCATAACCTCACTGCTCTCCATCACGGCCAGGCACCCGGAAGCATCTGAGGTTGGGTTCCAGACCCTCGAGTTCATCATGTCTGACGGGGCTCACCTCTTGCCGTCAATTAAATCTTTGGATCTGATGGCGAATTCATTGGTCTGCCTCGTTCAATGGTCTTGCAAGACGAAAGAAGCCATAGGGGAAGAGGCTTCGGCTCTTGCGAAAATGTATCAAGATATCGGTGAAATGTGGTTGAGATTGGTACAAGGACTTAGAAAAATTTGCATGGACCAACGAGAAGAGGTTCGTAACCACTCGATTTTGATGTTGCAAAGGTGCTTAACTGGAATGGATGGTATCCATATCCCAAATGAGCTTTGGTTACAATGTTTCGATCAGGTGATCTTCACGTTGCTCGATGAAATTTTGCAAATAACTGAGGATAATTCCCCAAAGGAGTATCGGAACATGGAAATGTCGCTATTTTTGTGCTTGAAACTTTTGTCGAAAGTCTTTTTACAGTCAATGGAGGATCTTTACCAGTCGAGTTCCTTTTGTAGACTATGGGTTGGGGTACTTGGTTGTATGGACAGATATATGAAGGTTAAATTAAGAGGTAAAAGAAGCGAGAAGATACACGAATTAGTACCTGAGCTCCTCAAGAACACCTTACTTGTGATGAAGACTCGAGGAATTCTTGTGGAAAATGATTCCGTTGGTGGTGAAAGTTTCTGGCAGTTAACATGGTTACACGTGAAAAATATTTCTCCGTCTTTGCAGTTAGAAGTTTTCCCCGAGCACAATAAAGCAGGGTGTAGTCCGCTCCCTGATGGGAATTTAGTGGTTCAGTCTAGCGAGACGACGACCTGA

Network for GWHGAAZE028431

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12783.8	Sec7_N	306	468	5.80E-34
PF01369.21	Sec7	550	733	1.20E-67

Protein Sequence

>GWHPAAZE028449
MKAMGCLNQHSNINTLALELKNCSNRPSGGALALMVNSEIGAVLAVMRRNVRWGVRYMADDDQLEHSLIQSFKELRRKIFSWQHQWHSINPVVYLQPFLDVIQSDETGAPITGVALSSVYKFLTLEIFDLDTVNVDDALHLIVDAVTSCRFEVTDPASEEVVLMKILQVLLACMKNKASLKLSNQHVCNIVNTCFRVVHQASSKGELLQRIARHTMHELIRCIFLHLPDIDNTEVSVRDADHTSGSKQQNNGNASSEHDDKPYSVGVSLNVSTDTFEGDGNMIEVGQGKEAAQSGDHLMKEPYGVPCMVEIFHFLCSLLNIIEENSGIGPRSNPIAYDEDVPLFALGLINSAIELGGASFAHHPKLLALIQDELFRHLMQFGLSMSPLILSTVCSIVLNLYYHLRTKLKLQLEAFFSCVLLRIAQSKHGASYQQQEVAMETLVDLCRQQTFMAEMYVNFDCDISCNNVFEELANLLSKSAFPVNSPLSTMHILALDGLIAMIQGMAERTFGELPASQNLEDYQAFWTVKCDNYDDPSQWVPFAHKMKFIKRKLMIGADHFNRAPMKGLEFLQGMHLLPDKLDSQSVACFLRYTTGLDKNLVGDFLGNHDEFCIDVLHEFAQTFDFSNMNLDTALRVFLETFKLPGESQKIQRVLEAFAERYYEQSPHILANKDAALLLSYSLIMLNTDQHNAQVKKKMTEEDFIRNNRHINGGNDLPRDYLCELYHSICMNEIRMTPETGAGFPVMTSSHWIGLKHKSKQSAPFIVCDSRENLDYDMFRILSSPTIAALSVVYDHVEQEDVLQTCIDGFLAVAKIAARYNLDDVLDDLVVSLSRMATVAVFTIANGYGDCVRGGWKNILDCILSLHRLGLVPTRLASDATDELDPAPELERGRAAAAPPVSHKPTLITSKRSSSLMGRFSQFLYLDADEPAPQPTEEQLLAHQRSLQAVQNCHIDNIFTESKFLQAESLSQLSRALILAAGRSYKGNNSVENEDIAVFCLELLIAVTLNNRDRIMLLWQGVYEHIANVVQSAVMPCTLVEKAVFGLLRICQRLLPYKENLTDELLKSLQLVLKLDARVADAYCEQITNEVMRLVKANAMQIRSHAGWRTITSLLSITARHPEASEVGFQTLEFIMSDGAHLLPSIKSLDLMANSLVCLVQWSCKTKEAIGEEASALAKMYQDIGEMWLRLVQGLRKICMDQREEVRNHSILMLQRCLTGMDGIHIPNELWLQCFDQVIFTLLDEILQITEDNSPKEYRNMEMSLFLCLKLLSKVFLQSMEDLYQSSSFCRLWVGVLGCMDRYMKVKLRGKRSEKIHELVPELLKNTLLVMKTRGILVENDSVGGESFWQLTWLHVKNISPSLQLEVFPEHNKAGCSPLPDGNLVVQSSETTT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18443	GBF1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0032012	biological_process	regulation of ARF protein signal transduction
GO:0005086	molecular_function	ARF guanyl-nucleotide exchange factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.154
	SRR3591706	second leaf	5.978
	SRR3591707	mature leaf	5.057
	SRR3591708	Shoot apex	8.394
	SRR3591709	Stem	9.425
	SRR3591710	White floral bud	10.779
	SRR3591711	White flower	11.724
	SRR3591712	Green floral bud	15.772
	SRR3591713	Yellow flower	10.315
SRP173429	SRR8316895	Juvenile bud stage	6.551
	SRR8316896	Juvenile bud stage	10.676
	SRR8316897	Juvenile bud stage	4.687
	SRR8316894	Third green stage	5.664
	SRR8316900	Third green stage	16.315
	SRR8316901	Third green stage	14.208
	SRR8316898	Complete white stage	4.640
	SRR8316899	Complete white stage	14.724
	SRR8316903	Complete white stage	9.237
	SRR8316902	Silver flowering stage	4.644
	SRR8316904	Silver flowering stage	8.225
	SRR8316905	Silver flowering stage	3.511
	SRR8316906	Gold flowering stage	12.577
	SRR8316907	Gold flowering stage	10.642
	SRR8316908	Gold flowering stage	11.759
SRP132670	SRR6706286	Control	11.994
	SRR6706287	Light intensity 50%	12.676
	SRR6706288	Light intensity 20%	12.801
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.009
	CNS0095593	Slightly white alabastrum(diploid) 2	9.657
	CNS0095594	Slightly white alabastrum(diploid) 3	9.602
	CNS0095595	Whole white alabastrum(diploid) 2	11.746
	CNS0095596	Whole white alabastrum(diploid) 3	12.805
	CNS0095597	Whole white alabastrum(diploid) 4	11.320
	CNS0095598	Silvery flower (diploied) 1	10.301
	CNS0095599	Silvery flower (diploied) 2	8.288
	CNS0095600	Silvery flower (diploied) 3	16.934
	CNS0095601	Golden flower (diploid) 1	9.396
	CNS0095602	Golden flower (diploid) 2	19.249
	CNS0095603	Golden flower (diploid) 3	18.702
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.580
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.159
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.447
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.651
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.520
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.301
	CNS0095610	Silvery flower (tetraploid) 1	12.420
	CNS0095611	Silvery flower (tetraploid) 2	12.866
	CNS0095612	Silvery flower (tetraploid) 3	12.943
	CNS0095613	Golden flower (tetraploid) 1	5.111
	CNS0095614	Golden flower (tetraploid) 2	11.822
	CNS0095615	Golden flower (tetraploid) 3	15.266
CRA001975	CRR073297	Stem 1	15.135
	CRR073298	Stem 2	14.435
	CRR073299	Stem 3	14.867
	CRR073300	Leaf 1	20.708
	CRR073301	Leaf 2	15.223
	CRR073302	Leaf 3	15.319
	CRR073303	Juvenile bud 1	21.315
	CRR073304	Juvenile bud 2	13.335
	CRR073305	Juvenile bud 3	24.223
	CRR073306	Third green 1	9.252
	CRR073307	Third green 2	7.187
	CRR073308	Third green 3	8.813
	CRR073309	Second white 1	11.062
	CRR073310	Second white 2	10.285
	CRR073311	Second white 3	13.150
	CRR073312	Silver flowering 1	14.474
	CRR073313	Silver flowering 2	16.254
	CRR073314	Silver flowering 3	12.062
	CRR073315	Gold flowering 1	5.453
	CRR073316	Gold flowering 2	8.653
	CRR073317	Gold flowering 3	8.831
	CRR073318	Tawny withering 1	11.443
	CRR073319	Tawny withering 2	7.727
	CRR073320	Tawny withering 3	10.268