Gene detail

Detail information of GWHGAAZE028419

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277290.1	0	PREDICTED: ferrochelatase-2, chloroplastic [Vitis vinifera]
COG	YP_007167757.1	1E-113	ferrochelatase
Swissprot	tr\|P42045\|HEMH_HORVU	3E-171	Ferrochelatase-2, chloroplastic (Precursor)
trEMBL	tr\|D7STM2\|D7STM2_VITVI	0	Ferrochelatase {ECO:0000256\|RuleBase:RU000607}
TAIR10	AT5G26030.2	7E-128	ferrochelatase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	55559547	55572696	+
GWHAAZE00000008	mRNA	55559547	55572696	+
GWHAAZE00000008	exon	55559547	55559774	+
GWHAAZE00000008	exon	55560215	55560358	+
GWHAAZE00000008	exon	55560976	55561035	+
GWHAAZE00000008	exon	55567958	55568061	+
GWHAAZE00000008	exon	55568175	55568301	+
GWHAAZE00000008	exon	55570022	55570174	+
GWHAAZE00000008	exon	55571190	55571290	+
GWHAAZE00000008	exon	55572492	55572696	+
GWHAAZE00000008	CDS	55559547	55559774	+
GWHAAZE00000008	CDS	55560215	55560358	+
GWHAAZE00000008	CDS	55560976	55561035	+
GWHAAZE00000008	CDS	55567958	55568061	+
GWHAAZE00000008	CDS	55568175	55568301	+
GWHAAZE00000008	CDS	55570022	55570174	+
GWHAAZE00000008	CDS	55571190	55571290	+
GWHAAZE00000008	CDS	55572492	55572696	+

Transcript Sequence
>GWHTAAZE028453 ATGGCTTCACCTTTTGATCCGACTAACAAAAGAAGCAGTATGCCTGGAGAATTGTACCTTCATAATTCCATTCAAAAAAGAAACATTTCTAGCATGAATTCTGAAAGTGCTGTTGAATCTCCTTTGCTCATGGAGGAGGAAAGGATTGGAGTGCTGCTTTTGAATCTTGGAGGACCGCAGACACTTTGTGATGTTCAGCCATTTTTGTTCAATTTATTTGTAGACCCGGATATCTTACGTCTCCCAAGGTTGTTTAAGTTCCTATTGCGACCCTTAGCGCAACTCATATCAGTACTTGTGGCTCCTGGAATTAAAAGAAGGTATGCTGCCATTGGAGGTGGTTCGCCTTTGCGGAAAATAACATTTGATCAGGCAAATGCTCTTAAAATGGTAATCTTGACGCAAAGCAAGTCCCTGCAAATGTCTATGTTGATTAAGGAGGACCGTATTACAAAGCTTGTAGTCTTGCCTCTTTATCCTCAGTTTTCCATCTCTACAACCGGCTCAAGTATCCGTGTTCTCGAAAGCATCTTCAGGGAAGATGCTTTCTTGTCGCGACTTCCTGTTTCTATTATAGAGTCATGGTATCGTCGAGAAGGTTACATTAAGTCTATGGCCGATTTGATCGAGAAGGAGTTACAAAGTTTTTCCGAGACCAAAGAGGTCATGATATTATTCAGTGCCCACGGGGTGCCGGTCAGCTATGTTGAGAGTGCAGGTGATCCATACAGAGATCAGATAGAGGAATGCATTTACTTGATAATGCAAGAACTGAAAGCAAGGGGAATTACCAATGATCATACTTTGGCTTACCAGAGCCGAGTTGGGCCATTAAAATGGTTGAAGCCCTACACTGATGAGGTTCTTGTTGAACTCGGCCAAAGAGGTTACAAGAGTCTCCTGGCTGTTCCCGTAAGCTTTGTGAGTGAACACATAGAGACTCTCGAAGAGATTGATATGAGGTACAAGGAGTTAGCCCTCAAATCTGGAATTCAAAACTGGGGTCGGGTCCCGACTTTAGGTTGTGTGCCTAATTTCATCGCCGATTTGGTAGACGCTGTCATCGACGCCTTGCCTTGTGCCGCAACAATGCCAACAATGGTGGATCCAAAAATTACATAA

Network for GWHGAAZE028419

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00762.20	Ferrochelatase	49	356	1.20E-85

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01772	hemH, FECH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0006783	biological_process	heme biosynthetic process
GO:0004325	molecular_function	ferrochelatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.117
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.996
	SRR3591711	White flower	11.112
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	9.071
SRP173429	SRR8316895	Juvenile bud stage	0.149
	SRR8316896	Juvenile bud stage	0.181
	SRR8316897	Juvenile bud stage	0.048
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.002
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.044
	SRR8316903	Complete white stage	0.007
	SRR8316902	Silver flowering stage	1.794
	SRR8316904	Silver flowering stage	1.675
	SRR8316905	Silver flowering stage	0.822
	SRR8316906	Gold flowering stage	4.351
	SRR8316907	Gold flowering stage	3.402
	SRR8316908	Gold flowering stage	5.397
SRP132670	SRR6706286	Control	0.007
	SRR6706287	Light intensity 50%	0.020
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.170
	CNS0095594	Slightly white alabastrum(diploid) 3	0.339
	CNS0095595	Whole white alabastrum(diploid) 2	0.034
	CNS0095596	Whole white alabastrum(diploid) 3	0.151
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.678
	CNS0095599	Silvery flower (diploied) 2	0.531
	CNS0095600	Silvery flower (diploied) 3	1.552
	CNS0095601	Golden flower (diploid) 1	0.505
	CNS0095602	Golden flower (diploid) 2	1.252
	CNS0095603	Golden flower (diploid) 3	1.412
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.078
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.393
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.044
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.154
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.040
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	4.790
	CNS0095611	Silvery flower (tetraploid) 2	5.406
	CNS0095612	Silvery flower (tetraploid) 3	13.023
	CNS0095613	Golden flower (tetraploid) 1	3.851
	CNS0095614	Golden flower (tetraploid) 2	3.257
	CNS0095615	Golden flower (tetraploid) 3	4.959
CRA001975	CRR073297	Stem 1	0.022
	CRR073298	Stem 2	0.004
	CRR073299	Stem 3	0.049
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.012
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	3.180
	CRR073307	Third green 2	2.011
	CRR073308	Third green 3	0.976
	CRR073309	Second white 1	4.005
	CRR073310	Second white 2	3.304
	CRR073311	Second white 3	2.220
	CRR073312	Silver flowering 1	1.041
	CRR073313	Silver flowering 2	1.317
	CRR073314	Silver flowering 3	0.880
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.002
	CRR073318	Tawny withering 1	0.358
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000