Detail information of GWHGAAZE028410


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011025126.10PREDICTED: chaperonin 60 subunit beta 2, chloroplastic [Populus euphratica]
COGYP_007146979.10chaperonin GroL
Swissprottr|P08927|RUBB_PEA0RuBisCO large subunit-binding protein subunit beta, chloroplastic (Precursor)
trEMBLtr|A9PF58|A9PF58_POPTR0Uncharacterized protein {ECO:0000313|EMBL:EEE82422.1}
TAIR10AT3G13470.10TCP-1/cpn60 chaperonin family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene5507163555077051-
GWHAAZE00000008mRNA5507163555077051-
GWHAAZE00000008exon5507163555071648-
GWHAAZE00000008exon5507213955072265-
GWHAAZE00000008exon5507248455072576-
GWHAAZE00000008exon5507286955072961-
GWHAAZE00000008exon5507381655073920-
GWHAAZE00000008exon5507402455074095-
GWHAAZE00000008exon5507421755074294-
GWHAAZE00000008exon5507437455074543-
GWHAAZE00000008exon5507466555074899-
GWHAAZE00000008exon5507498655075228-
GWHAAZE00000008exon5507536855075463-
GWHAAZE00000008exon5507579155075928-
GWHAAZE00000008exon5507641555076540-
GWHAAZE00000008exon5507680055077051-
GWHAAZE00000008CDS5507680055077051-
GWHAAZE00000008CDS5507641555076540-
GWHAAZE00000008CDS5507579155075928-
GWHAAZE00000008CDS5507536855075463-
GWHAAZE00000008CDS5507498655075228-
GWHAAZE00000008CDS5507466555074899-
GWHAAZE00000008CDS5507437455074543-
GWHAAZE00000008CDS5507421755074294-
GWHAAZE00000008CDS5507402455074095-
GWHAAZE00000008CDS5507381655073920-
GWHAAZE00000008CDS5507286955072961-
GWHAAZE00000008CDS5507248455072576-
GWHAAZE00000008CDS5507213955072265-
GWHAAZE00000008CDS5507163555071648-
Transcript Sequence

Network for GWHGAAZE028410

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00118.25Cpn60_TCP1905931.10E-100
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04077groEL, HSPD1 RNA degradation map03018
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName
GO:0042026biological_processprotein refolding
GO:0006457biological_processprotein folding
GO:0005737cellular_componentcytoplasm
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf373.086
SRR3591706second leaf343.065
SRR3591707mature leaf235.772
SRR3591708Shoot apex578.594
SRR3591709Stem154.698
SRR3591710White floral bud406.544
SRR3591711White flower580.386
SRR3591712Green floral bud405.698
SRR3591713Yellow flower802.225
SRP173429 SRR8316895Juvenile bud stage 254.274
SRR8316896Juvenile bud stage 337.342
SRR8316897Juvenile bud stage 185.466
SRR8316894Third green stage 139.122
SRR8316900Third green stage 533.925
SRR8316901Third green stage 413.960
SRR8316898Complete white stage 152.711
SRR8316899Complete white stage 336.583
SRR8316903Complete white stage 299.788
SRR8316902Silver flowering stage317.643
SRR8316904Silver flowering stage479.409
SRR8316905Silver flowering stage305.352
SRR8316906Gold flowering stage 1026.626
SRR8316907Gold flowering stage 979.769
SRR8316908Gold flowering stage 1120.688
SRP132670SRR6706286Control491.545
SRR6706287Light intensity 50%485.352
SRR6706288Light intensity 20%510.369
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1208.029
CNS0095593Slightly white alabastrum(diploid) 2208.736
CNS0095594Slightly white alabastrum(diploid) 3171.737
CNS0095595Whole white alabastrum(diploid) 2198.461
CNS0095596Whole white alabastrum(diploid) 3209.999
CNS0095597Whole white alabastrum(diploid) 4151.797
CNS0095598Silvery flower (diploied) 1313.938
CNS0095599Silvery flower (diploied) 2343.494
CNS0095600Silvery flower (diploied) 3601.080
CNS0095601Golden flower (diploid) 1352.062
CNS0095602Golden flower (diploid) 2551.156
CNS0095603Golden flower (diploid) 3548.197
CNS0095604Slightly white alabastrum(tetraploid) 1243.113
CNS0095605Slightly white alabastrum(tetraploid) 2213.094
CNS0095606Slightly white alabastrum(tetraploid) 3476.383
CNS0095607Whole white alabastrum(tetraploid) 196.994
CNS0095608Whole white alabastrum(tetraploid) 287.396
CNS0095609Whole white alabastrum(tetraploid) 3446.531
CNS0095610Silvery flower (tetraploid) 1617.429
CNS0095611Silvery flower (tetraploid) 2706.036
CNS0095612Silvery flower (tetraploid) 3972.728
CNS0095613Golden flower (tetraploid) 1559.583
CNS0095614Golden flower (tetraploid) 2785.587
CNS0095615Golden flower (tetraploid) 3915.303
CRA001975CRR073297Stem 1304.213
CRR073298Stem 2295.572
CRR073299Stem 3303.574
CRR073300Leaf 1278.569
CRR073301Leaf 2262.924
CRR073302Leaf 3303.269
CRR073303Juvenile bud 1325.640
CRR073304Juvenile bud 2250.401
CRR073305Juvenile bud 3263.888
CRR073306Third green 1275.211
CRR073307Third green 2134.080
CRR073308Third green 3199.346
CRR073309Second white 1597.483
CRR073310Second white 2650.598
CRR073311Second white 3722.529
CRR073312Silver flowering 1627.600
CRR073313Silver flowering 2599.365
CRR073314Silver flowering 3554.116
CRR073315Gold flowering 1283.788
CRR073316Gold flowering 2387.007
CRR073317Gold flowering 3157.873
CRR073318Tawny withering 1115.304
CRR073319Tawny withering 297.019
CRR073320Tawny withering 3139.783