Gene detail

Detail information of GWHGAAZE028406

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010049555.1	4.4451E-57	PREDICTED: transcription factor MYB1R1-like [Eucalyptus grandis]
Swissprot	tr\|Q8S9H7\|DIV_ANTMA	3E-27	Transcription factor DIVARICATA
trEMBL	tr\|A0A067GX64\|A0A067GX64_CITSI	2E-56	Uncharacterized protein {ECO:0000313\|EMBL:KDO80052.1}
TAIR10	AT5G47390.1	3E-29	myb-like transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	54834904	54837762	-
GWHAAZE00000008	mRNA	54834904	54837762	-
GWHAAZE00000008	exon	54837378	54837762	-
GWHAAZE00000008	exon	54834904	54835115	-
GWHAAZE00000008	CDS	54837378	54837762	-
GWHAAZE00000008	CDS	54834904	54835115	-

Transcript Sequence
>GWHTAAZE028440 ATGGTAAGGAAGTGCTCACATTGTGGGAACATAGGTCACAATACAAGGACATGTACCACTCACAAAGCAAGAAGTACTACTACTACTACTCATTTAGATAGTGGGGGTGTTAGGCTCTTTGGGGTGGAACTTGGCTGCTTTGCTTCTAATTCTTCTTCTTGTACATCATCAAATAATAATAATGATGTTTCAATAATGAAGAAGAGTTTTAGCATGGATTCAGTTTTATCAGTTTCATCAACACCAGCAGCATCCTCTTCTTCACTTTCCAATAATATTGATCATGAATATGGTGGAGCAGGTGCTCATCCTCATAAAGTTTCTCATGGTTATGTCTCTGATGGCCTAATCAACAATTCCCCAACCCATGACAGGAAAAGAAAGGGGGTGCCATGGACAGAAGAAGAGCACAGAATATTTCTTGTAGGGCTAGAAAAGCTTGGAAAAGGGGATTGGAGGGGCATTTCCAAGAAATTTGTGACTACAAGAACTCCAACACAAGTGGCAAGTCATGCCCAAAAGTATTTTCTTAGACAAAGTAATTTCCTCAACAATAAACACAAATCCAGACGTCGCCCTAGCCTCTTTGATGACCCT

Network for GWHGAAZE028406

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	131	175	3.80E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	7.066
	SRR3591707	mature leaf	20.961
	SRR3591708	Shoot apex	1.172
	SRR3591709	Stem	2.221
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.144
	SRR3591712	Green floral bud	0.065
	SRR3591713	Yellow flower	0.121
SRP173429	SRR8316895	Juvenile bud stage	0.144
	SRR8316896	Juvenile bud stage	0.012
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.111
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.042
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.015
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.443
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.003
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.199
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.382
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.116
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.038
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.279
	CRR073316	Gold flowering 2	1.232
	CRR073317	Gold flowering 3	0.311
	CRR073318	Tawny withering 1	0.580
	CRR073319	Tawny withering 2	0.402
	CRR073320	Tawny withering 3	0.365