Detail information of GWHGAAZE028391


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010276942.10PREDICTED: cysteine--tRNA ligase, cytoplasmic [Nelumbo nucifera]
COGYP_006719017.13E-136cysteinyl-tRNA ligase
trEMBLtr|A0A059CF73|A0A059CF73_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW77007.1}
TAIR10AT5G38830.13E-156Cysteinyl-tRNA synthetase, class Ia family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene5417884254186444-
GWHAAZE00000008mRNA5417884254186444-
GWHAAZE00000008exon5418636454186444-
GWHAAZE00000008exon5418378454184007-
GWHAAZE00000008exon5418362354183686-
GWHAAZE00000008exon5418253854182699-
GWHAAZE00000008exon5418124054181410-
GWHAAZE00000008exon5418041854180699-
GWHAAZE00000008exon5418013854180263-
GWHAAZE00000008exon5417945254179631-
GWHAAZE00000008exon5417919654179312-
GWHAAZE00000008exon5417884254179078-
GWHAAZE00000008CDS5418636454186444-
GWHAAZE00000008CDS5418378454184007-
GWHAAZE00000008CDS5418362354183686-
GWHAAZE00000008CDS5418253854182699-
GWHAAZE00000008CDS5418124054181410-
GWHAAZE00000008CDS5418041854180699-
GWHAAZE00000008CDS5418013854180263-
GWHAAZE00000008CDS5417945254179631-
GWHAAZE00000008CDS5417919654179312-
GWHAAZE00000008CDS5417884254179078-
Transcript Sequence

Network for GWHGAAZE028391

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01406.20tRNA-synt_1e653626.30E-118
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01883CARS, cysS Aminoacyl-tRNA biosynthesis map00970

Gene Ontology

GO term OntologyName
GO:0006423biological_processcysteinyl-tRNA aminoacylation
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004817molecular_functioncysteine-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0000166molecular_functionnucleotide binding
GO:0004812molecular_functionaminoacyl-tRNA ligase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.628
SRR3591706second leaf1.762
SRR3591707mature leaf1.374
SRR3591708Shoot apex8.715
SRR3591709Stem5.697
SRR3591710White floral bud14.337
SRR3591711White flower10.028
SRR3591712Green floral bud14.308
SRR3591713Yellow flower6.142
SRP173429 SRR8316895Juvenile bud stage 14.166
SRR8316896Juvenile bud stage 19.506
SRR8316897Juvenile bud stage 9.771
SRR8316894Third green stage 6.829
SRR8316900Third green stage 11.618
SRR8316901Third green stage 10.394
SRR8316898Complete white stage 3.096
SRR8316899Complete white stage 16.340
SRR8316903Complete white stage 5.644
SRR8316902Silver flowering stage2.027
SRR8316904Silver flowering stage3.085
SRR8316905Silver flowering stage1.153
SRR8316906Gold flowering stage 3.029
SRR8316907Gold flowering stage 4.043
SRR8316908Gold flowering stage 4.930
SRP132670SRR6706286Control12.479
SRR6706287Light intensity 50%12.432
SRR6706288Light intensity 20%12.633
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.254
CNS0095593Slightly white alabastrum(diploid) 210.019
CNS0095594Slightly white alabastrum(diploid) 310.572
CNS0095595Whole white alabastrum(diploid) 28.331
CNS0095596Whole white alabastrum(diploid) 37.559
CNS0095597Whole white alabastrum(diploid) 47.392
CNS0095598Silvery flower (diploied) 110.893
CNS0095599Silvery flower (diploied) 28.235
CNS0095600Silvery flower (diploied) 38.383
CNS0095601Golden flower (diploid) 18.774
CNS0095602Golden flower (diploid) 29.328
CNS0095603Golden flower (diploid) 38.672
CNS0095604Slightly white alabastrum(tetraploid) 110.135
CNS0095605Slightly white alabastrum(tetraploid) 29.938
CNS0095606Slightly white alabastrum(tetraploid) 316.325
CNS0095607Whole white alabastrum(tetraploid) 17.497
CNS0095608Whole white alabastrum(tetraploid) 25.712
CNS0095609Whole white alabastrum(tetraploid) 310.383
CNS0095610Silvery flower (tetraploid) 18.713
CNS0095611Silvery flower (tetraploid) 210.641
CNS0095612Silvery flower (tetraploid) 39.359
CNS0095613Golden flower (tetraploid) 13.030
CNS0095614Golden flower (tetraploid) 24.347
CNS0095615Golden flower (tetraploid) 34.593
CRA001975CRR073297Stem 126.274
CRR073298Stem 223.101
CRR073299Stem 333.685
CRR073300Leaf 115.783
CRR073301Leaf 211.905
CRR073302Leaf 312.472
CRR073303Juvenile bud 112.214
CRR073304Juvenile bud 28.397
CRR073305Juvenile bud 316.544
CRR073306Third green 12.531
CRR073307Third green 22.999
CRR073308Third green 33.620
CRR073309Second white 13.143
CRR073310Second white 22.712
CRR073311Second white 32.234
CRR073312Silver flowering 10.877
CRR073313Silver flowering 21.492
CRR073314Silver flowering 33.432
CRR073315Gold flowering 10.357
CRR073316Gold flowering 20.925
CRR073317Gold flowering 30.175
CRR073318Tawny withering 15.723
CRR073319Tawny withering 23.742
CRR073320Tawny withering 35.373