Gene detail

Detail information of GWHGAAZE028362

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010648364.1	0	PREDICTED: U-box domain-containing protein 52 isoform X2 [Vitis vinifera]
COG	YP_008151634.1	5E-18	hypothetical protein SCE1572_26190
Swissprot	tr\|Q8S8S7\|PUB34_ARATH	1E-95	Serine/threonine-protein kinase
trEMBL	tr\|F6H3P5\|F6H3P5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46578.1}
TAIR10	AT5G26150.1	4E-126	protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	52855508	52860894	+
GWHAAZE00000008	mRNA	52855508	52860894	+
GWHAAZE00000008	exon	52855508	52855649	+
GWHAAZE00000008	exon	52856173	52856304	+
GWHAAZE00000008	exon	52856904	52856983	+
GWHAAZE00000008	exon	52857094	52857177	+
GWHAAZE00000008	exon	52857823	52858251	+
GWHAAZE00000008	exon	52860198	52860598	+
GWHAAZE00000008	exon	52860666	52860894	+
GWHAAZE00000008	CDS	52855508	52855649	+
GWHAAZE00000008	CDS	52856173	52856304	+
GWHAAZE00000008	CDS	52856904	52856983	+
GWHAAZE00000008	CDS	52857094	52857177	+
GWHAAZE00000008	CDS	52857823	52858251	+
GWHAAZE00000008	CDS	52860198	52860598	+
GWHAAZE00000008	CDS	52860666	52860894	+

Transcript Sequence
>GWHTAAZE028396 ATGAGGATAAGGGATACTGTATTGGCTGCCATGTCAGTTTGTGAGGGATCTGTTCACAGATGGATTGGGGATGTTTTTGGAGGAGGAAGGTTTTTTCTTGTTAAGAGAGCAAGGAGCAAAGGATTCCACAGATGGGGAGGTGTGACCAAAAACAAACTCCTTAGTATGAGGATTAATAGCTTAGGGGATGCCAACAAGACTGGTAATGCTTATCAGAAGCTGTGGATCCCAATATTCCTGTGTGATTCCATGAAGTCTAACCCATACAAGAGAGAAATTGTAGAATCTAATATTGAACCTGTTGGAGCTGAACTGGAGAGCAGGGGCAACAAGGCTAGAGATGAGATAGGCCAGATAGGTTTTGACGATAAGATTGAGTTGGAATATAGTTTTGTAGAAGGCGGTTTTCTGGTGGGGGAGGGTGGTTTCAAGGTGGTGGCCAAAGAGCTTCATCAATGGAAGATTGAAAAAGAAAACAGTTATGAACAAGCAAAGCTTTCTCAAGAGGCAGCTCTTGCCATTGCGGAGATGGAGAAAGCCAAGTGTAAAGCTGCAGTGGAAGCAGCGGAGAAGGCACAAAAGATAGCTGACATGGAAGCACAGAGAAGATTGTATGCAGAACTGAAAGCCAAACGAGAGGCAGAAGAGAAAATTCGAGCACTGAATGTTTTATCAAACAACAGTACATCTTACAGAAAATACACCATAGAAGAGATCGAAACGGCCACTGACAAGTTCTCGGATTCGTTAAAGATTGGTGAAGGCGGATATGGGCCTGTGTACAGAGGCAAACTTGATCACACTCCAGTTGCCATTAAAGTTCTTAGACCTGATACTACCCATGGGAAGAAGCAATTCCAGCAAGAGGTTGAGGTCCTATGTTGTATGAGACATCCAAACATGGTTCTCCTATTAGGTGCCTGTCCAGAGTACGGATGCTTGGTATACGAATTCATGAATAACGGAAGCTTAGAAGATCGATTATTTCTAAAAGGTAACACCCCTCCAATTCCATGGAATCTCCGGTTCAAAATAGCAGCCGAGATTGCAATCGGGCTTCTCTTTCTTCACAATACAAAGCCTGAACCACTGGTGCACCGGGACCTTAAGCCAGCCAACATCCTTTTAGACTGTAACTTCACTAGCAAAATTAGTGATGTTGGGTTGTCACGGTTAGTCCCAGCTTCTGTAGCCGATAGTGTGACTCAATATCATATAACTAAGGCTGCAGGGACATTTTATTACATAGATCCGGTATCAGCAAGCGGGCCACCAATGGGTCTCACCCACCATGTTGGGACAGCTATTGAAAGGGGTACCTTTTCTGATTTGCTTGATCCAGCGGTAGCAGATTGGCCTGTTGAAGAGGCTCTCAGCTTTGCAAAATTGGCTCTCAATTGTGCTGAGTTAAGGAAGAAGGATAGACCAGATCTTGGCTTGGTTGTGTTGCCGGAGCTGAACCGGCTAAGAAAATTTGGAATGCGGGTTATCGAGTAA

Network for GWHGAAZE028362

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	251	393	1.20E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXb

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.438
	SRR3591706	second leaf	0.143
	SRR3591707	mature leaf	0.297
	SRR3591708	Shoot apex	0.779
	SRR3591709	Stem	0.304
	SRR3591710	White floral bud	0.584
	SRR3591711	White flower	0.077
	SRR3591712	Green floral bud	3.813
	SRR3591713	Yellow flower	0.072
SRP173429	SRR8316895	Juvenile bud stage	0.636
	SRR8316896	Juvenile bud stage	0.889
	SRR8316897	Juvenile bud stage	0.264
	SRR8316894	Third green stage	0.678
	SRR8316900	Third green stage	4.141
	SRR8316901	Third green stage	2.849
	SRR8316898	Complete white stage	0.266
	SRR8316899	Complete white stage	0.986
	SRR8316903	Complete white stage	0.328
	SRR8316902	Silver flowering stage	0.348
	SRR8316904	Silver flowering stage	0.642
	SRR8316905	Silver flowering stage	0.274
	SRR8316906	Gold flowering stage	0.625
	SRR8316907	Gold flowering stage	0.558
	SRR8316908	Gold flowering stage	0.108
SRP132670	SRR6706286	Control	2.714
	SRR6706287	Light intensity 50%	3.131
	SRR6706288	Light intensity 20%	2.476
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.531
	CNS0095593	Slightly white alabastrum(diploid) 2	1.556
	CNS0095594	Slightly white alabastrum(diploid) 3	3.085
	CNS0095595	Whole white alabastrum(diploid) 2	9.429
	CNS0095596	Whole white alabastrum(diploid) 3	10.352
	CNS0095597	Whole white alabastrum(diploid) 4	12.906
	CNS0095598	Silvery flower (diploied) 1	0.328
	CNS0095599	Silvery flower (diploied) 2	0.489
	CNS0095600	Silvery flower (diploied) 3	0.564
	CNS0095601	Golden flower (diploid) 1	0.334
	CNS0095602	Golden flower (diploid) 2	0.559
	CNS0095603	Golden flower (diploid) 3	0.450
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.743
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.925
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.377
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.948
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.206
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.866
	CNS0095610	Silvery flower (tetraploid) 1	0.273
	CNS0095611	Silvery flower (tetraploid) 2	0.289
	CNS0095612	Silvery flower (tetraploid) 3	0.294
	CNS0095613	Golden flower (tetraploid) 1	0.162
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.075
CRA001975	CRR073297	Stem 1	2.059
	CRR073298	Stem 2	2.358
	CRR073299	Stem 3	1.977
	CRR073300	Leaf 1	6.842
	CRR073301	Leaf 2	4.329
	CRR073302	Leaf 3	2.278
	CRR073303	Juvenile bud 1	4.706
	CRR073304	Juvenile bud 2	3.486
	CRR073305	Juvenile bud 3	2.147
	CRR073306	Third green 1	1.779
	CRR073307	Third green 2	0.799
	CRR073308	Third green 3	1.481
	CRR073309	Second white 1	0.402
	CRR073310	Second white 2	0.790
	CRR073311	Second white 3	1.206
	CRR073312	Silver flowering 1	2.116
	CRR073313	Silver flowering 2	2.088
	CRR073314	Silver flowering 3	0.453
	CRR073315	Gold flowering 1	1.702
	CRR073316	Gold flowering 2	1.709
	CRR073317	Gold flowering 3	1.226
	CRR073318	Tawny withering 1	1.524
	CRR073319	Tawny withering 2	1.673
	CRR073320	Tawny withering 3	1.673