Gene detail

Detail information of GWHGAAZE028360

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009591661.1	1.5727E-131	PREDICTED: U-box domain-containing protein 35-like isoform X4 [Nicotiana tomentosiformis]
COG	YP_005528758.1	1E-16	serine/threonine protein kinase
Swissprot	tr\|Q8S8S7\|PUB34_ARATH	1E-81	Serine/threonine-protein kinase
trEMBL	tr\|M1CXH0\|M1CXH0_SOLTU	3E-133	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400076835}
TAIR10	AT5G12000.1	1E-101	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	52555334	52555999	+
GWHAAZE00000008	mRNA	52555334	52555999	+
GWHAAZE00000008	exon	52555334	52555999	+
GWHAAZE00000008	CDS	52555334	52555999	+

Transcript Sequence
>GWHTAAZE028394 ATGGTTCTCCTATTAGGTGCCTGTCCAGAGTACGGATGCTTGGTATACGAATTCATGAATAACGGAAGCTTAGAAGATCGATTATTTCGAAAAGGTAATACCCCTCCAATTCCATGGAATCTCCGGTTCAAAATAGCAGCCGAGATTGCAATCGGGCTTCTCTTTCTTCACAATACAAAGCCTGAACCACTGGTGCACCGGGACCTTAAGCCAGCCAACATCCTTTTAGACCGTAACTTCACTAGCAAAATTAGTGATGTTGGGTTGTCACGGTTAGTCCCAGCTTCTGTAGCCGATAGTGTGACTCAATATCATATAACTAAGGCTGCAGGGACATTTTATTACATAGATCCCGAGTATCAGCAAACGGGTAAATTAGGAACTAAATCGGATACCTACTCACTGGGAATATTATTACTCCAAATTATAACCGCAAGGCCACCAATGGGTCTCACCCACCATGTTGGGACAGCTATTGAAAGGGGTACCTTTTCTGATTTGCTTGATCCAGCGGTAGCAGATTGGCCTGTTGAAGAGGCTCTCAGCTTTGCAAAATTGGCTCTCAATTGTGCTGAGTTAAGGAAGAAGGATAGACCAGATCTTGGCTCGGTTGTGTTGCCGGAGCTGAACCGGCTAAGAAAATTTGGAATGCGGGTTATCGAGTAA

Network for GWHGAAZE028360

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	11	200	2.60E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXb

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.861
	SRR3591706	second leaf	0.272
	SRR3591707	mature leaf	0.806
	SRR3591708	Shoot apex	1.520
	SRR3591709	Stem	0.651
	SRR3591710	White floral bud	3.342
	SRR3591711	White flower	0.868
	SRR3591712	Green floral bud	9.343
	SRR3591713	Yellow flower	0.570
SRP173429	SRR8316895	Juvenile bud stage	2.148
	SRR8316896	Juvenile bud stage	3.021
	SRR8316897	Juvenile bud stage	4.589
	SRR8316894	Third green stage	1.515
	SRR8316900	Third green stage	5.954
	SRR8316901	Third green stage	4.838
	SRR8316898	Complete white stage	0.366
	SRR8316899	Complete white stage	1.495
	SRR8316903	Complete white stage	0.540
	SRR8316902	Silver flowering stage	0.041
	SRR8316904	Silver flowering stage	0.595
	SRR8316905	Silver flowering stage	0.182
	SRR8316906	Gold flowering stage	0.311
	SRR8316907	Gold flowering stage	0.597
	SRR8316908	Gold flowering stage	0.655
SRP132670	SRR6706286	Control	5.471
	SRR6706287	Light intensity 50%	6.661
	SRR6706288	Light intensity 20%	6.639
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.942
	CNS0095593	Slightly white alabastrum(diploid) 2	4.997
	CNS0095594	Slightly white alabastrum(diploid) 3	4.946
	CNS0095595	Whole white alabastrum(diploid) 2	16.253
	CNS0095596	Whole white alabastrum(diploid) 3	18.836
	CNS0095597	Whole white alabastrum(diploid) 4	21.526
	CNS0095598	Silvery flower (diploied) 1	0.381
	CNS0095599	Silvery flower (diploied) 2	1.507
	CNS0095600	Silvery flower (diploied) 3	0.501
	CNS0095601	Golden flower (diploid) 1	0.768
	CNS0095602	Golden flower (diploid) 2	0.735
	CNS0095603	Golden flower (diploid) 3	1.539
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.100
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.194
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.508
	CNS0095607	Whole white alabastrum(tetraploid) 1	59.749
	CNS0095608	Whole white alabastrum(tetraploid) 2	68.494
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.666
	CNS0095610	Silvery flower (tetraploid) 1	0.908
	CNS0095611	Silvery flower (tetraploid) 2	1.650
	CNS0095612	Silvery flower (tetraploid) 3	4.114
	CNS0095613	Golden flower (tetraploid) 1	1.176
	CNS0095614	Golden flower (tetraploid) 2	0.751
	CNS0095615	Golden flower (tetraploid) 3	1.576
CRA001975	CRR073297	Stem 1	5.315
	CRR073298	Stem 2	4.777
	CRR073299	Stem 3	2.306
	CRR073300	Leaf 1	9.084
	CRR073301	Leaf 2	6.629
	CRR073302	Leaf 3	5.622
	CRR073303	Juvenile bud 1	7.868
	CRR073304	Juvenile bud 2	5.841
	CRR073305	Juvenile bud 3	3.813
	CRR073306	Third green 1	1.296
	CRR073307	Third green 2	0.735
	CRR073308	Third green 3	1.422
	CRR073309	Second white 1	1.098
	CRR073310	Second white 2	1.387
	CRR073311	Second white 3	0.682
	CRR073312	Silver flowering 1	1.729
	CRR073313	Silver flowering 2	1.997
	CRR073314	Silver flowering 3	0.346
	CRR073315	Gold flowering 1	14.230
	CRR073316	Gold flowering 2	15.304
	CRR073317	Gold flowering 3	4.336
	CRR073318	Tawny withering 1	1.603
	CRR073319	Tawny withering 2	0.503
	CRR073320	Tawny withering 3	1.684