Detail information of GWHGAAZE028356


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010648365.10PREDICTED: probable protein phosphatase 2C 53 [Vitis vinifera]
COGYP_003709340.11E-15serine/threonine PP2C protein phosphatase
Swissprottr|Q9CAJ0|P2C16_ARATH3E-163Protein phosphatase 2C 16 (Precursor)
trEMBLtr|F6H3P7|F6H3P7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB46580.1}
TAIR10AT1G72770.35E-131homology to ABI1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene5233346652338307-
GWHAAZE00000008mRNA5233346652338307-
GWHAAZE00000008exon5233744752338307-
GWHAAZE00000008exon5233664152336958-
GWHAAZE00000008exon5233644052336537-
GWHAAZE00000008exon5233346652333802-
GWHAAZE00000008CDS5233744752338307-
GWHAAZE00000008CDS5233664152336958-
GWHAAZE00000008CDS5233644052336537-
GWHAAZE00000008CDS5233346652333802-
Transcript Sequence

Network for GWHGAAZE028356

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00481.22PP2C2635186.10E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14497PP2C MAPK signaling pathway - plant map04016
Plant hormone signal transductionmap04075

Gene Ontology

GO term OntologyName
GO:0043169molecular_functioncation binding
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf88.376
SRR3591706second leaf98.346
SRR3591707mature leaf113.861
SRR3591708Shoot apex79.700
SRR3591709Stem84.150
SRR3591710White floral bud49.230
SRR3591711White flower54.305
SRR3591712Green floral bud44.736
SRR3591713Yellow flower44.086
SRP173429 SRR8316895Juvenile bud stage 22.127
SRR8316896Juvenile bud stage 27.096
SRR8316897Juvenile bud stage 11.730
SRR8316894Third green stage 16.300
SRR8316900Third green stage 38.284
SRR8316901Third green stage 33.338
SRR8316898Complete white stage 19.660
SRR8316899Complete white stage 47.459
SRR8316903Complete white stage 24.444
SRR8316902Silver flowering stage31.108
SRR8316904Silver flowering stage45.908
SRR8316905Silver flowering stage23.883
SRR8316906Gold flowering stage 91.738
SRR8316907Gold flowering stage 70.002
SRR8316908Gold flowering stage 94.923
SRP132670SRR6706286Control31.871
SRR6706287Light intensity 50%33.819
SRR6706288Light intensity 20%36.844
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.784
CNS0095593Slightly white alabastrum(diploid) 223.031
CNS0095594Slightly white alabastrum(diploid) 313.993
CNS0095595Whole white alabastrum(diploid) 216.779
CNS0095596Whole white alabastrum(diploid) 317.970
CNS0095597Whole white alabastrum(diploid) 416.655
CNS0095598Silvery flower (diploied) 125.264
CNS0095599Silvery flower (diploied) 220.450
CNS0095600Silvery flower (diploied) 323.794
CNS0095601Golden flower (diploid) 122.950
CNS0095602Golden flower (diploid) 229.641
CNS0095603Golden flower (diploid) 326.433
CNS0095604Slightly white alabastrum(tetraploid) 125.939
CNS0095605Slightly white alabastrum(tetraploid) 222.712
CNS0095606Slightly white alabastrum(tetraploid) 348.234
CNS0095607Whole white alabastrum(tetraploid) 118.625
CNS0095608Whole white alabastrum(tetraploid) 212.169
CNS0095609Whole white alabastrum(tetraploid) 332.888
CNS0095610Silvery flower (tetraploid) 135.640
CNS0095611Silvery flower (tetraploid) 224.988
CNS0095612Silvery flower (tetraploid) 340.045
CNS0095613Golden flower (tetraploid) 120.497
CNS0095614Golden flower (tetraploid) 237.667
CNS0095615Golden flower (tetraploid) 339.909
CRA001975CRR073297Stem 161.349
CRR073298Stem 257.898
CRR073299Stem 353.705
CRR073300Leaf 162.071
CRR073301Leaf 257.882
CRR073302Leaf 351.800
CRR073303Juvenile bud 144.439
CRR073304Juvenile bud 243.843
CRR073305Juvenile bud 339.887
CRR073306Third green 1114.070
CRR073307Third green 271.088
CRR073308Third green 396.331
CRR073309Second white 1117.060
CRR073310Second white 2143.447
CRR073311Second white 3126.559
CRR073312Silver flowering 1123.366
CRR073313Silver flowering 2120.650
CRR073314Silver flowering 3102.742
CRR073315Gold flowering 156.209
CRR073316Gold flowering 266.694
CRR073317Gold flowering 354.638
CRR073318Tawny withering 143.830
CRR073319Tawny withering 242.925
CRR073320Tawny withering 346.715