Gene detail

Detail information of GWHGAAZE028351

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011088709.1	3.17505E-54	PREDICTED: putative receptor-like protein kinase At5g39000 isoform X2 [Sesamum indicum]
COG	YP_003371856.1	0.00000003	serine/threonine protein kinase with WD40 repeats
Swissprot	tr\|Q9FID9\|Y5389_ARATH	5E-45	Probable receptor-like protein kinase At5g38990 (Precursor)
trEMBL	tr\|M0RU06\|M0RU06_MUSAM	2E-54	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P20760_001}
TAIR10	AT5G38990.1	1E-42	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	52208863	52212719	+
GWHAAZE00000008	mRNA	52208863	52212719	+
GWHAAZE00000008	exon	52208863	52209598	+
GWHAAZE00000008	exon	52209833	52210402	+
GWHAAZE00000008	exon	52210571	52210744	+
GWHAAZE00000008	exon	52211686	52211923	+
GWHAAZE00000008	exon	52212557	52212719	+
GWHAAZE00000008	CDS	52208863	52209598	+
GWHAAZE00000008	CDS	52209833	52210402	+
GWHAAZE00000008	CDS	52210571	52210744	+
GWHAAZE00000008	CDS	52211686	52211923	+
GWHAAZE00000008	CDS	52212557	52212719	+

Transcript Sequence
>GWHTAAZE028385 ATGTTGTTCCATCCTCAATTAAAGATTCTTTACTTTCTCTCCTCCTTCTTCCTCAATCTTTTCATTGGAGGTAACTCCAACCCTGTTAATGTTGATTTCAATGATTATCATTTTGCCACTCCAAACTCTCAGCATCCTGCTGTAAACCATCCATTTTTTGTATCCCCTTTCGGCCGTGTAAACATAATTGCAACTACTGTTATAATTATAATCACCCTATTGAACATCATAGTTTACAAGTTACGCCAGCTTCATGAAGCCCAACAACTTGAAGAAGCAAATCTTGGCGAGAAAACAAGTAACCACACCCAGTTGGCATCGGAAAAATCACTCCGTCGTTTTTCACTTCCTGAAATGTTATCCGCAACCCATAACTTTGATGATTCAGAGGTCATCGGAAAAGGCGGATTTGGCAAGGTGTACAAAGGGGCCATTGACGATGGGCTAGTTTCTGTAGCCATAAAGCGTTTGAATCACACGTCCAAACAAGGAGCTGTCGAATTTCTTACTGAGATCAAGATGCTTTCAAAATTTCGGCACAGTAATCTTATATCTCTCATTGGTTATTGCGACGACCGTGACGAAATGATACTTGTTTACGAATATATGGAACGTAGCGCCCTAGCTGATCATATTTACAAAATGGATACAAGTGCTAATAATTCTGCTCTATCTTGGGTGCAACGCCTCAAGATTTGCATAGGGGCTGCACGTGGTTTGGAGTACCTTCACACGGTTCTTTCTGGAAGACAAGTGGTGGATTTAACACGGCCTGAGGAGCAATGGGGTCTCATTTTCTGGGCCCAACATTGCATCAAAGAAGAAGACATAAATAAAATTGTCGATCTCCGTTTGAGTTGCCAAATATTGCCAAATTCTTTAGCATCATTTCTGAAAATTGCCAATCATTGCTTGCATTATCGATCCAAGAAGCGGCCTACAATGGCTGAAGTGGTGGTCTCACTTGAGTGTGCACTGGCGTTGCAAGAGAGAACAGACTCTTCAGTGTTCGATCGAGATCTGTTAAGTATGGGTAGGGATTTTGGCAATCAAGATATTGTAGATTGCTGCTCAGAACAACCCGGCGTTATCCATTCAGGTGGCGGCGAGCATCATGATGGCAATCAAGAAATTGTGGATTATTCCTCAAAACAACAGGACATTGTCTACTCTGTTAATTGTTCGCATAAGTATACGAGGCTGGCTGATCAAAGCAGCAGGAATTCTCGTACAAAAACAACCAAAATAACAGCATTCATAAATACAATGCGAGAAGCTTTTGGGGGCAAACCTCGGATGCGCACAGGATTCTCAAATTTATGGAGGCAGAAGAAGAAGAAGCCACTGATATCTGATGTGAGCAGAAGTCAAGAGCATATTTCAATACGCTTTTCAGGACAAGATGAACCGTTCTTATTCAGTTTCGATGACATAAACATTGCCACTGAAAGATTTGCAGACAGGAACAAGATTGGACAAGATCCAGTCAACAGGGCAGATTTGGACTGGGATAGTCGCTACAAAATCATTGGAGGTATTGCTCGGGGACTTTTGTATCTTCATGAGGATTCTCGACTTCGAATTATTCACCGTGATATGAAGGCTAGCAATGTTTTGTTAGATGGAGAGATGAATCCAAAAATTGCGGATTTTGGCTTGGCAAATTTGTTTGAAAGAGATGAAACCCAAGGCAATACAGGCGGAATTGTGGGGACCCTCTTCTCTCTCAGTCTGCCCGAACCTTCAGAGCCAGCATTTTTCATGCACGGGCCACCGTTTGGGGAATATAGTTCGGGGACACGCGAATCCAGTGAATGGAAAAATGCATCCACCAAAGTTTCAGTAAATGATGCTTCTTTTTCCGAGTTTTATCCTCGGTAG

Network for GWHGAAZE028351

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	130	245	4.50E-21
PF00069.26	Pkinase	506	562	1.60E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.747
	SRR3591706	second leaf	0.229
	SRR3591707	mature leaf	0.066
	SRR3591708	Shoot apex	0.351
	SRR3591709	Stem	1.689
	SRR3591710	White floral bud	0.939
	SRR3591711	White flower	1.953
	SRR3591712	Green floral bud	0.862
	SRR3591713	Yellow flower	1.314
SRP173429	SRR8316895	Juvenile bud stage	0.083
	SRR8316896	Juvenile bud stage	0.030
	SRR8316897	Juvenile bud stage	0.753
	SRR8316894	Third green stage	0.014
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.029
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.005
	SRR8316904	Silver flowering stage	0.029
	SRR8316905	Silver flowering stage	0.018
	SRR8316906	Gold flowering stage	0.023
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.131
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.017
	SRR6706288	Light intensity 20%	0.028
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.039
	CNS0095593	Slightly white alabastrum(diploid) 2	0.065
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.004
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.014
	CNS0095598	Silvery flower (diploied) 1	0.048
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.050
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.111
	CNS0095603	Golden flower (diploid) 3	0.020
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.117
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.031
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.079
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.052
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.122
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.129
	CNS0095610	Silvery flower (tetraploid) 1	0.210
	CNS0095611	Silvery flower (tetraploid) 2	0.136
	CNS0095612	Silvery flower (tetraploid) 3	0.286
	CNS0095613	Golden flower (tetraploid) 1	0.200
	CNS0095614	Golden flower (tetraploid) 2	0.153
	CNS0095615	Golden flower (tetraploid) 3	0.079
CRA001975	CRR073297	Stem 1	0.024
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.002
	CRR073300	Leaf 1	0.051
	CRR073301	Leaf 2	0.014
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.008
	CRR073306	Third green 1	0.009
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.010
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.001
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.075
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000