Gene detail

Detail information of GWHGAAZE028348

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU44215.1	1.0603E-109	hypothetical protein MIMGU_mgv1a000477mg [Erythranthe guttata]
COG	YP_001958461.1	6E-25	hypothetical protein Aasi_1443
Swissprot	tr\|Q9FID9\|Y5389_ARATH	1E-100	Probable receptor-like protein kinase At5g38990 (Precursor)
trEMBL	tr\|A0A022RZ14\|A0A022RZ14_ERYGU	4E-110	Uncharacterized protein {ECO:0000313\|EMBL:EYU44215.1}
TAIR10	AT5G38990.1	6E-90	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	52065154	52068285	+
GWHAAZE00000008	mRNA	52065154	52068285	+
GWHAAZE00000008	exon	52065154	52066505	+
GWHAAZE00000008	exon	52067239	52067463	+
GWHAAZE00000008	exon	52068054	52068285	+
GWHAAZE00000008	CDS	52065154	52066505	+
GWHAAZE00000008	CDS	52067239	52067463	+
GWHAAZE00000008	CDS	52068054	52068285	+

Transcript Sequence
>GWHTAAZE028382 ATGATCATCCTATTGAAGATCATAGTTTACAAGTCACGGCAGCATCGAGAAGCAAACTTTGCAAAGACCCAACAACTTGAAGAAGCAAATCTTGGCGAGAAAACAAGTAGCCACACCCAGTTGGCATCGGAAAAATCACTCCGTCGTTTTCCACTTCCTGAAATATTATCCGCAACCCATAACTTTGATGATTCAGAGGTCATCGGGAAAGGCGGGTTTGGCAAGGTGTACAAAGGGGCAATTGATGACGGGCAAGTTACTGTTGCCATAAAGCGTTTGAATCACACATCCAAGCAAGGAACTGTCGAATTTCTTACTGAGATCGAGATGCTTTCGAAATTTCGGCACAGCAATCTTATATCTCTAATAGGATATTGCAACGACCGTGATGAAATGATACTTGTTTATGAATATATGGAACGCGGGGCCCTGGCTGATCATATTTACAAAATGGATACAAGTGCTAATAATTCTGTTCTATCTTGGGTGCAACGCCTCAAGATTTGCATAGGGGCTGCACGTGGTTTGGAGTACCTTCACACGGGTACCAATGTCATACACCGTGATTTGAAGTGCTCAAACATTTTATTAGATGAAAATTTGACGGCTAAGGTTTCAGATTTTGGGATATCTAAGGTAGGTCCTACAAAGCAGTCAAGCAGCCATATAAGCACCAAAATTAAGGGCACAAGAGGGTACGTGGATCCGGAGTATTTGTTGACTTATAAACTGACGAAGAAATCCGATGTTTACTCCTTTGGAGTTGTATTGTTTGAAGTTCTTTCCGGAAGACAAGTGTTGGATTTAACACGGCCTGAGGAGCAATGGGGTCTCATTTTCTGGGCCCAACATTGCATCAAAGAAGAAGATATAAATAAAATTGTCGATCCCCGTTTGAGTTGCCAAATTTTGCCAAATTCTTTGGCGACGTTTGTCAAAATTGCCAATCATTGCTTGCATTATCGTTCCAAGAAGCGGCCTACAATGGCTGAAGTGGTGGCCTCACTTGAGTGTGCACTGGCGTTGCAAGAGAGAACAGACTCTTCAGTCTTCGATCGTGATCTGTTGAGTATGGGTGGGGATTTTGGCAATCAAGATATTGTCGATTGCTCCTCAGAAAAACCTGAGGTAATCCATTCAGGTAGCAGCGAGCATCATGATGGCAATCAAGAAATTGTGGAATATTCCTCAAAACAACAGGACGTTGTCTACTCTGGTAACGGACGGCATAAGTATACAAGGCTGGCTGATCAAAGCAGCGGGAATTCTCGTAAAAAAACAACCAAAATAAATGCATTCACAAAGACAATGCGAGAAGTTTTTGGGGGCAAACCACGTACTGATGAGCACAGGGCAGATTTGGACTGGGATAGATGCTACAAAATCATTGGAGGTGTTGCTCGGGGACTTCTGTATCTTCATGAGGAATCTCGACCTCGAATTATTCACCATGATATGCAAGTTAGCAATGTTTTGTTAGATGAAGAGATGAATCCAAAAATTGCATATTTTGGCGTGGCAAGATTTTTTGAAACAGATGAAACCCAAGGCAATACAAGTAGGATTGTGGGGACCCAACCAGCTATGGCTTTAATTATTTTGATGCCTAGTAGCTTCTCTCTCAGTTTGCCCGTACCTTCAATGCCAACGTTTTTCATACACAGCAGTGTGGTTGATCCAGAAAAGCCATTGTATGGGGAATATAATTTTGGGACAAGCAAATCCAGTGAATGGAAAAATGCACCCACCCAATTTTCAGTAAATGATGCTTCGTTTTCTGAGTTTTATCCATGGCAGCGCTTTTCTTGA

Network for GWHGAAZE028348

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	66	336	3.50E-53
PF00069.26	Pkinase	454	527	1.40E-09

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.879
	SRR3591706	second leaf	0.193
	SRR3591707	mature leaf	0.955
	SRR3591708	Shoot apex	0.371
	SRR3591709	Stem	2.355
	SRR3591710	White floral bud	1.132
	SRR3591711	White flower	2.172
	SRR3591712	Green floral bud	1.148
	SRR3591713	Yellow flower	1.525
SRP173429	SRR8316895	Juvenile bud stage	0.354
	SRR8316896	Juvenile bud stage	0.611
	SRR8316897	Juvenile bud stage	1.081
	SRR8316894	Third green stage	0.112
	SRR8316900	Third green stage	0.084
	SRR8316901	Third green stage	0.045
	SRR8316898	Complete white stage	0.134
	SRR8316899	Complete white stage	1.118
	SRR8316903	Complete white stage	0.059
	SRR8316902	Silver flowering stage	0.100
	SRR8316904	Silver flowering stage	0.082
	SRR8316905	Silver flowering stage	0.130
	SRR8316906	Gold flowering stage	0.630
	SRR8316907	Gold flowering stage	0.641
	SRR8316908	Gold flowering stage	1.345
SRP132670	SRR6706286	Control	0.195
	SRR6706287	Light intensity 50%	0.293
	SRR6706288	Light intensity 20%	0.129
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.573
	CNS0095593	Slightly white alabastrum(diploid) 2	0.714
	CNS0095594	Slightly white alabastrum(diploid) 3	0.540
	CNS0095595	Whole white alabastrum(diploid) 2	0.139
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.185
	CNS0095598	Silvery flower (diploied) 1	0.672
	CNS0095599	Silvery flower (diploied) 2	0.930
	CNS0095600	Silvery flower (diploied) 3	0.814
	CNS0095601	Golden flower (diploid) 1	1.492
	CNS0095602	Golden flower (diploid) 2	1.972
	CNS0095603	Golden flower (diploid) 3	1.970
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.238
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.107
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.483
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.182
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.070
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.702
	CNS0095610	Silvery flower (tetraploid) 1	1.071
	CNS0095611	Silvery flower (tetraploid) 2	0.931
	CNS0095612	Silvery flower (tetraploid) 3	0.941
	CNS0095613	Golden flower (tetraploid) 1	0.495
	CNS0095614	Golden flower (tetraploid) 2	0.910
	CNS0095615	Golden flower (tetraploid) 3	1.025
CRA001975	CRR073297	Stem 1	0.035
	CRR073298	Stem 2	0.073
	CRR073299	Stem 3	0.065
	CRR073300	Leaf 1	0.035
	CRR073301	Leaf 2	0.037
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.081
	CRR073305	Juvenile bud 3	0.053
	CRR073306	Third green 1	0.131
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.167
	CRR073309	Second white 1	0.006
	CRR073310	Second white 2	0.016
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.330
	CRR073313	Silver flowering 2	0.136
	CRR073314	Silver flowering 3	0.063
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.042
	CRR073317	Gold flowering 3	0.094
	CRR073318	Tawny withering 1	1.017
	CRR073319	Tawny withering 2	1.963
	CRR073320	Tawny withering 3	0.983