Gene detail

Detail information of GWHGAAZE028345

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	5.9522E-108	unnamed protein product [Coffea canephora]
COG	YP_001958461.1	5E-25	hypothetical protein Aasi_1443
Swissprot	tr\|Q9FID9\|Y5389_ARATH	4E-86	Probable receptor-like protein kinase At5g38990 (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	2E-108	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT5G38990.1	6E-78	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	52006263	52009279	+
GWHAAZE00000008	mRNA	52006263	52009279	+
GWHAAZE00000008	exon	52006263	52007253	+
GWHAAZE00000008	exon	52007397	52007771	+
GWHAAZE00000008	exon	52007944	52008111	+
GWHAAZE00000008	exon	52009041	52009279	+
GWHAAZE00000008	CDS	52006263	52007253	+
GWHAAZE00000008	CDS	52007397	52007771	+
GWHAAZE00000008	CDS	52007944	52008111	+
GWHAAZE00000008	CDS	52009041	52009279	+

Transcript Sequence
>GWHTAAZE028379 ATGTTGTTCCATCCTCAATTACAGATTCTCTTCTTCTTCTTCTTCTTCTTCCTCAATCTTTTCATTGGAGGTAACTCCAACCCTGTTAACGTTGATTTCAATGATTACCATTTTGCCACTCCAAACTTTGTATCCCCTTTCGGCCGTGTAAACATAATTGCAACTACTGTTATAATTATAATCACCCTATTGAACATCATAGTTTACAAGTTACGGCAGCTTCATGAAGGCCAACAACTTGAAGAAGCAAATCTTGGCGAGAAAACAAGTAGCCACACCCAGTTGGCATCGGAAAAATCACTTCGTCGTTTTTCACTTCCTGAAATATTATCCGCAACCCATAACTTTGATGATTCAAAGGTCATCGGAAAAGGTGGGTTTGGCAAGGTTTACAAAGGGGCTATTGACGATGGGCTAGTTTCTGTAGCCATAAAGCGTTTGAATCACACGTCCAAACAAGGAGCTGTCGAATTTCTTACTGAGATCAACATGCTTTCGAAATTTCGGCACAGCAATCTTATATCTCTAATTGGGTATTGTGACGACCGTGACGAAATGATACTCGTTTACGAATATATGGAACGCGGGGCCCTGGCTGATCATATTTACAAAATGGATACAAGTGCTAATAATTCTGCTCTATCTTGGGTGCAACGTCTCAAGATTTGTGTAGGGGCTGCACGTGGTTTGGAGTACCTTCACACGGGTACCAACGTCATACACCGTGATTTGAAGTGCTCGAACATTTTATTAGATGAGAATTTGACGGCTAAGGTTTCAGATTTTGGGATATCTAAAGTAGGCCCTACAAATCAATCAAGTAGCCATGTAAGCACCAAAATTAAGGGCACAAGGGGGTACGTGGATCCGGAGTATTTGTTGACTCATAAATTGACGAAGAAATCCGATGTTTACTCCTTTGGAGTTGTATTGTTTGAAGTTCTTTCCGGAAGACAAGTGGTGGATTTAACACGGCCTGAGGAGCAATGGGAAGCGCCTACAATGGCTGAAGTGGTGGCGCCACTTGAGTGTGCATTGGCGCTGCAAGAGAGAACAGACTCTTCAGTGTTCGATCGTGATCTGTTGAGTATGGGTAGGGATTTTGGCAATCAAGATATTGTGGATTGCTCCTCAGAACAACCTGAGGTTATCCATTCAGGTAGTGGGGAGCATCATGATGGCAATCAAGCATTTGTGGATTATTCCTCAAAACAACAGGACGTTGTCTACTCTGGTAACGGTCGACATAAATATACAAGGCTGGCTGATCAAAGCAGCGAGAATTCTCGTACAAAAACAACCAAAATAACAGCATTCATAAAGACAATGCGAGAAGCTTTTGGGGGCAAACCTCAGACGAGCACAGGATTCTCAAATTCATGGAGGCGGAAGAAGAAGCCACTGATATTTGATGGGAGCAGAAGTCAAGAACTTATAACACGCTTTTCAGGACAAGATGAACCGTTCTTTTTCAGTTTCAATGACGTAAACATTGCCACTGAAAGATTTGCAGACAGGAACAAGATTGGACAAGATCCAGTCAACAGGGCAGATTTGGACTGGGATAGACGCTACAAAATCATCGGAGGTGTTGCTCGGGGACTTTTGTATCTTCATGAGGATTCTCGACTTCGAATTATCCACCGTGATATGAAAGCTAGCAATGTTTTGTTAGATGAAGAGATGAATCCAAAAATTGCGGATTTTGGCATGGCAAGTTTGTTTGAAAGAGATGAAATCCAAGGCAATACAGACGTGATTGTGGGGACCTAG

Network for GWHGAAZE028345

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	119	321	1.10E-48
PF00069.26	Pkinase	523	580	1.10E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.658
	SRR3591706	second leaf	1.630
	SRR3591707	mature leaf	1.077
	SRR3591708	Shoot apex	2.359
	SRR3591709	Stem	10.638
	SRR3591710	White floral bud	3.667
	SRR3591711	White flower	4.782
	SRR3591712	Green floral bud	1.240
	SRR3591713	Yellow flower	3.810
SRP173429	SRR8316895	Juvenile bud stage	4.537
	SRR8316896	Juvenile bud stage	4.088
	SRR8316897	Juvenile bud stage	5.257
	SRR8316894	Third green stage	0.946
	SRR8316900	Third green stage	2.112
	SRR8316901	Third green stage	2.347
	SRR8316898	Complete white stage	0.685
	SRR8316899	Complete white stage	6.051
	SRR8316903	Complete white stage	1.410
	SRR8316902	Silver flowering stage	3.605
	SRR8316904	Silver flowering stage	2.218
	SRR8316905	Silver flowering stage	1.295
	SRR8316906	Gold flowering stage	6.511
	SRR8316907	Gold flowering stage	4.559
	SRR8316908	Gold flowering stage	4.971
SRP132670	SRR6706286	Control	1.856
	SRR6706287	Light intensity 50%	3.297
	SRR6706288	Light intensity 20%	2.208
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.894
	CNS0095593	Slightly white alabastrum(diploid) 2	1.792
	CNS0095594	Slightly white alabastrum(diploid) 3	1.645
	CNS0095595	Whole white alabastrum(diploid) 2	0.928
	CNS0095596	Whole white alabastrum(diploid) 3	0.736
	CNS0095597	Whole white alabastrum(diploid) 4	1.096
	CNS0095598	Silvery flower (diploied) 1	3.384
	CNS0095599	Silvery flower (diploied) 2	3.878
	CNS0095600	Silvery flower (diploied) 3	9.250
	CNS0095601	Golden flower (diploid) 1	6.782
	CNS0095602	Golden flower (diploid) 2	6.999
	CNS0095603	Golden flower (diploid) 3	8.062
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.279
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.326
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.758
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.339
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.219
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.774
	CNS0095610	Silvery flower (tetraploid) 1	2.086
	CNS0095611	Silvery flower (tetraploid) 2	1.467
	CNS0095612	Silvery flower (tetraploid) 3	2.988
	CNS0095613	Golden flower (tetraploid) 1	1.304
	CNS0095614	Golden flower (tetraploid) 2	1.480
	CNS0095615	Golden flower (tetraploid) 3	1.338
CRA001975	CRR073297	Stem 1	1.338
	CRR073298	Stem 2	0.936
	CRR073299	Stem 3	0.297
	CRR073300	Leaf 1	1.506
	CRR073301	Leaf 2	1.581
	CRR073302	Leaf 3	0.719
	CRR073303	Juvenile bud 1	0.880
	CRR073304	Juvenile bud 2	0.556
	CRR073305	Juvenile bud 3	1.435
	CRR073306	Third green 1	1.123
	CRR073307	Third green 2	0.795
	CRR073308	Third green 3	1.641
	CRR073309	Second white 1	2.577
	CRR073310	Second white 2	2.023
	CRR073311	Second white 3	2.576
	CRR073312	Silver flowering 1	2.889
	CRR073313	Silver flowering 2	2.425
	CRR073314	Silver flowering 3	2.175
	CRR073315	Gold flowering 1	0.580
	CRR073316	Gold flowering 2	1.131
	CRR073317	Gold flowering 3	0.347
	CRR073318	Tawny withering 1	3.265
	CRR073319	Tawny withering 2	5.676
	CRR073320	Tawny withering 3	4.220