Gene detail

Detail information of GWHGAAZE028341

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KGN53791.1	1.02726E-53	hypothetical protein Csa_4G129570 [Cucumis sativus]
COG	YP_001958461.1	0.000000007	hypothetical protein Aasi_1443
Swissprot	tr\|Q9FID9\|Y5389_ARATH	1E-46	Probable receptor-like protein kinase At5g38990 (Precursor)
trEMBL	tr\|M0RU06\|M0RU06_MUSAM	8E-58	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P20760_001}
TAIR10	AT5G38990.1	9E-44	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	51779048	51782150	+
GWHAAZE00000008	mRNA	51779048	51782150	+
GWHAAZE00000008	exon	51779048	51779573	+
GWHAAZE00000008	exon	51779808	51780377	+
GWHAAZE00000008	exon	51781102	51781232	+
GWHAAZE00000008	exon	51781794	51782150	+
GWHAAZE00000008	CDS	51779048	51779573	+
GWHAAZE00000008	CDS	51779808	51780377	+
GWHAAZE00000008	CDS	51781102	51781232	+
GWHAAZE00000008	CDS	51781794	51782150	+

Transcript Sequence
>GWHTAAZE028375 ATCATAGTTTACAAGTCACGGCAGCATCGAGAAGCAAACTTTGCAAAGACCCAACAACTTGAAGAAGCAAATCTTGGCGAGAAAACAAGTAGCCACACCCAGTTGGCATCGGAAAAATCACTTCGTCGTTTTTCACTTCCTGAAATATTATCCGCAACCCATAACTTTGATGATTCAGAGGTCATCGGGAAAGGCGGGTTTGGCAAGGTGTACAAAGGGGCAATTGACGACGGGCTAGTTACTGTTGCCATAAAGCGTTTGAATCACACGTCCAAACAAGGAGCTGTCGAATTTCTTACTGAGATTGAGATGCTTTCGAAATTTCGGCACAGCAATCTTATATCTTTAATTGGGTATTGCAACGACTGTGATGAAATGATACTTGTTTACGAATATATGGAACGCGGGGCTCTGGCTGATCATATTTACAAAATGGATACAAGTGCTAATAATTCTGTTCTATCTTGGGTGCAACGCCTCAAGATTTGCATAGGGGCTGCACGTGGTTTGGAGTACCTACACACGGTTCTTTCCGGAAGACAAGTGGTGGATTTAACACGGCCTGAGGAGCAATGGGGTCTCATTTTCTGGGCTCAACATTGCATCAAAGAAGAAGATATAAATAAAATTGTCGATCCCCGTTTGAGTTGCCAAATATTGCCAAATTCTTTGGTGTCGTTTATCAAAATTGCCAATCATTGCTTGCATTATCGTTCCAAGAAGCGGCCTACAATGGCTGAGGTGGTGGCCTCACTTGAGTGTGCACTGGCGTTGCAAGAGAGAACAGACTCTTCAGTGTTCGATCGTGATCTGTTGAGTATGGGTGGGGATTTTGGCAATCAAGATATTGTAGATTGCTCCTCAGAAAAACCTGAGGTATTCCATTCAGGTAGCAGCGAGCATCATGATGGCAATCAAGAAATTGTGGATTATTCCTCAAAACAACAGGACGTTGTCTACTCTGGTAACGGTCGGCATAAGTATACAAGGCTGGCTGATCACAGCAGTGGGAATTCTCGTAAAAAAACAACCAAAATAAACGCATTCATAAAGACAATGCGAGAAGCTTTTGGGGGCAAACCACAGATGAGCACAGATCCAGTCAACAGGGCAGATTTGGACTGGGATAGATGCTACAAAATCATTGGAGGTGTTGCTCGGGGATTTCTGTATCTTCATGAGGATTCTCGACCTCAAATTATTCACCTTGATATGCAAGCTAGCAATGCTTCGAAAAATTGGAAAGAACTAGGAGGTACAAATTTGATAGACCCAATATTGAGATATAATTCAAGGCCAATTCGTGACATAATGAGATGCATACACATTGGACTGCTATGTGTCCAACAAAATCCAACTGACAGACCAACTATGGCTTCAATTGTTTTGATGCTTAGTAGCTTCTCTCTCAGTCTGCCCGTACTTTCAGAGCCAACATTTTTCGTGCACAGCAGTATGGTTGATCCAGAAAAGCTGCTGTGTGGGGATTATAATTTGGGGACAAGCGAATCGAGTGAATGGAAAAATGCACCCACCCAACTTTCAGTAAATGATGCTTCGTTTTCTGAGTTTTATCCTCGGTAG

Network for GWHGAAZE028341

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	60	175	1.30E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.683
	SRR3591706	second leaf	0.044
	SRR3591707	mature leaf	0.131
	SRR3591708	Shoot apex	0.056
	SRR3591709	Stem	0.368
	SRR3591710	White floral bud	0.543
	SRR3591711	White flower	0.936
	SRR3591712	Green floral bud	0.482
	SRR3591713	Yellow flower	1.071
SRP173429	SRR8316895	Juvenile bud stage	0.593
	SRR8316896	Juvenile bud stage	0.572
	SRR8316897	Juvenile bud stage	0.305
	SRR8316894	Third green stage	0.029
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.317
	SRR8316898	Complete white stage	0.054
	SRR8316899	Complete white stage	0.499
	SRR8316903	Complete white stage	0.049
	SRR8316902	Silver flowering stage	0.295
	SRR8316904	Silver flowering stage	0.292
	SRR8316905	Silver flowering stage	0.049
	SRR8316906	Gold flowering stage	0.383
	SRR8316907	Gold flowering stage	0.398
	SRR8316908	Gold flowering stage	0.201
SRP132670	SRR6706286	Control	0.266
	SRR6706287	Light intensity 50%	0.221
	SRR6706288	Light intensity 20%	0.103
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.497
	CNS0095593	Slightly white alabastrum(diploid) 2	0.590
	CNS0095594	Slightly white alabastrum(diploid) 3	0.987
	CNS0095595	Whole white alabastrum(diploid) 2	0.214
	CNS0095596	Whole white alabastrum(diploid) 3	0.108
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.228
	CNS0095599	Silvery flower (diploied) 2	0.462
	CNS0095600	Silvery flower (diploied) 3	0.925
	CNS0095601	Golden flower (diploid) 1	1.537
	CNS0095602	Golden flower (diploid) 2	1.850
	CNS0095603	Golden flower (diploid) 3	1.451
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.054
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.028
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.126
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.145
	CNS0095610	Silvery flower (tetraploid) 1	0.314
	CNS0095611	Silvery flower (tetraploid) 2	0.091
	CNS0095612	Silvery flower (tetraploid) 3	0.056
	CNS0095613	Golden flower (tetraploid) 1	0.015
	CNS0095614	Golden flower (tetraploid) 2	0.167
	CNS0095615	Golden flower (tetraploid) 3	0.121
CRA001975	CRR073297	Stem 1	0.048
	CRR073298	Stem 2	0.036
	CRR073299	Stem 3	0.123
	CRR073300	Leaf 1	0.326
	CRR073301	Leaf 2	0.137
	CRR073302	Leaf 3	0.111
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.153
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.155
	CRR073309	Second white 1	0.005
	CRR073310	Second white 2	0.094
	CRR073311	Second white 3	0.057
	CRR073312	Silver flowering 1	0.015
	CRR073313	Silver flowering 2	0.031
	CRR073314	Silver flowering 3	0.081
	CRR073315	Gold flowering 1	0.071
	CRR073316	Gold flowering 2	0.135
	CRR073317	Gold flowering 3	0.044
	CRR073318	Tawny withering 1	0.395
	CRR073319	Tawny withering 2	1.905
	CRR073320	Tawny withering 3	0.730