Gene detail

Detail information of GWHGAAZE028339

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI38478.3	9.56716E-87	unnamed protein product [Vitis vinifera]
COG	YP_001875818.1	0.000000003	serine/threonine protein kinase
Swissprot	tr\|Q8GYA4\|CRK10_ARATH	1E-36	Cysteine-rich receptor-like protein kinase 10 (Precursor)
trEMBL	tr\|A0A067JDJ2\|A0A067JDJ2_JATCU	2E-48	Uncharacterized protein {ECO:0000313\|EMBL:KDP20813.1}
TAIR10	AT4G23180.1	1E-33	cysteine-rich RLK (RECEPTOR-like protein kinase) 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	51735052	51748073	+
GWHAAZE00000008	mRNA	51735052	51748073	+
GWHAAZE00000008	exon	51735052	51735152	+
GWHAAZE00000008	exon	51745520	51746067	+
GWHAAZE00000008	exon	51747053	51747290	+
GWHAAZE00000008	exon	51747890	51748073	+
GWHAAZE00000008	CDS	51735052	51735152	+
GWHAAZE00000008	CDS	51745520	51746067	+
GWHAAZE00000008	CDS	51747053	51747290	+
GWHAAZE00000008	CDS	51747890	51748073	+

Transcript Sequence
>GWHTAAZE028373 ATGGCCGGAAGTTCACCGACGAGGAGATACTCGCTTGTCAACGCGGTCATTGACGGTTCAGGCGCTTCATCGATGGATTCTCTATCGATTTTGCTCCGCACCGTGTACAGATCAAACCTCGACTCGGCCCTCTCTTTGATATCAGCAAACACCAACAGAACCATCTATGGTTTCAACAGTACCTCGGTTGGTCAAGACGCTGACCGGGCCTTTAACGACTCTGCGAGAGGAGACATCGACCAGGAAACTTGTGGTCAGTGTGTCTATAACTCCACTCTTAAGCTAAGAGAGATTTGTCCTAACCAAAAGGAGGCCATTGGTGGTTATGACTTTTGTATGTTAAGGTACTCGAATAGCTCTATACTTGAATACGTGGAGAATTCCATTTCTATCTCTTTGTGGAACATTAACAATGTTTCAAATGTGGTTCGGTTCAATGAGGATCTAAGGACCTTGATGGACAGCCTAATACCACGAGCCGCTGGTGGTGGTCCTCTTCGTAAGTTTGACTCGGGGAATGTGCGTGGCCCGGACTTTTTGACTATATATGGGCTTGTACAGTGCACTCCTAATTTATCCGAGGACCTTTGTGAGAATTGCTTAGTTGGGGCCGCTAGGGGTATTCCGGGATGTTGTGAAGGAAAAGCAGATCCAGTCAACAGGGCAGATTTGGACTGGGATCGACGCTACAAAATCATTGGAGGTGTTGCTCGAGGACTTTTGTATCTTCATGAGGATTCTCGACTTCGAATTATTCACCGTGATATGAAAGCTAGCAATGTTTTGTTAGATGAAGAGATGAATCCAAAAATTGCAGATTTTGGCATGGCAAGGTTGTTTGAAAGAGATGAAACCCAAGGCAATACAAGCAGGATTGTGGGGACCTACTTCTCTCTTAGTCTGCCCGTTCCTTCAGAGCCAGCATTTTTCATGCACAGCAGTGTGGTTGATCCAGAAATGCCTCTGTTTGGGGAATATAATTCGGGGACAAGCGAATCCAGTGAATGGAAAAATGCATCCACCAAAGTTTCAGTAAATGATGCTTCTTTTTCAGAGTTTTATCCTCGGTAG

Network for GWHGAAZE028339

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01657.18	Stress-antifung	34	118	1.80E-08
PF01657.18	Stress-antifung	140	215	3.00E-08
PF00069.26	Pkinase	229	295	5.80E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.231
	SRR3591706	second leaf	0.287
	SRR3591707	mature leaf	0.330
	SRR3591708	Shoot apex	0.480
	SRR3591709	Stem	0.219
	SRR3591710	White floral bud	0.201
	SRR3591711	White flower	0.409
	SRR3591712	Green floral bud	0.193
	SRR3591713	Yellow flower	1.151
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.019
	SRR8316897	Juvenile bud stage	0.368
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.019
	SRR8316898	Complete white stage	0.086
	SRR8316899	Complete white stage	0.068
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.037
	SRR8316904	Silver flowering stage	0.016
	SRR8316905	Silver flowering stage	0.026
	SRR8316906	Gold flowering stage	0.196
	SRR8316907	Gold flowering stage	0.070
	SRR8316908	Gold flowering stage	0.920
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.009
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.011
	CNS0095593	Slightly white alabastrum(diploid) 2	0.113
	CNS0095594	Slightly white alabastrum(diploid) 3	0.049
	CNS0095595	Whole white alabastrum(diploid) 2	0.083
	CNS0095596	Whole white alabastrum(diploid) 3	0.020
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.039
	CNS0095600	Silvery flower (diploied) 3	0.015
	CNS0095601	Golden flower (diploid) 1	0.030
	CNS0095602	Golden flower (diploid) 2	0.091
	CNS0095603	Golden flower (diploid) 3	0.103
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.015
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.035
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.128
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.081
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.089
	CNS0095610	Silvery flower (tetraploid) 1	0.107
	CNS0095611	Silvery flower (tetraploid) 2	0.018
	CNS0095612	Silvery flower (tetraploid) 3	0.060
	CNS0095613	Golden flower (tetraploid) 1	0.586
	CNS0095614	Golden flower (tetraploid) 2	0.457
	CNS0095615	Golden flower (tetraploid) 3	0.087
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.018
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.018
	CRR073301	Leaf 2	0.039
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.034
	CRR073307	Third green 2	0.064
	CRR073308	Third green 3	0.012
	CRR073309	Second white 1	0.122
	CRR073310	Second white 2	0.077
	CRR073311	Second white 3	0.117
	CRR073312	Silver flowering 1	0.163
	CRR073313	Silver flowering 2	0.003
	CRR073314	Silver flowering 3	0.118
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.024
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.057
	CRR073319	Tawny withering 2	0.082
	CRR073320	Tawny withering 3	0.064