Gene detail

Detail information of GWHGAAZE028288

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP34051.1	2.2264E-116	hypothetical protein JCGZ_07622 [Jatropha curcas]
Swissprot	tr\|Q5XEM9\|ALFL5_ARATH	6E-100	PHD finger protein ALFIN-LIKE 5, N-terminally processed
trEMBL	tr\|A0A067KCV1\|A0A067KCV1_JATCU	8E-117	Uncharacterized protein {ECO:0000313\|EMBL:KDP34051.1}
TAIR10	AT5G20510.1	2E-70	alfin-like 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	49696784	49700277	+
GWHAAZE00000008	mRNA	49696784	49700277	+
GWHAAZE00000008	exon	49696784	49697028	+
GWHAAZE00000008	exon	49699260	49699392	+
GWHAAZE00000008	exon	49700002	49700277	+
GWHAAZE00000008	CDS	49696784	49697028	+
GWHAAZE00000008	CDS	49699260	49699392	+
GWHAAZE00000008	CDS	49700002	49700277	+

Transcript Sequence
>GWHTAAZE028322 ATGTTTAATTTTACAGATAAGGAAAATCTTTGCCTCTATGGATTTCCCAATGAGCAGTGGGAAGTGAATTTACCAGCTGAAGAGGTGCCTCCAGAGCTTCCGGAGCCTGCACTGGGCATTAACTTTGCCAGAGATGGAATGCAAGAAAAGGACTGGTTATCTTTGGTTGCTGTCCACAGCGATGCTTGGTTACTCGCTGTTGCCTTCTATTTTGGTGCTAGATTTGGATTTGATAGAGCTGATAGAAAACGGCTTTTTAACATGATAAATGATCTCCCAACAATATTTGAGGTTGTGACTGGGGCTGCGAAGAAGCAGACCAAGGAGAAGTCATCGGTCTCAAATCACAGCAGCAGCAAATCTAAGTCAAACCCTAAGCGGGGCACGGAATCTCAGCCCAAGTATCCGAAAGGGGCACCACCACCAAAAGACGAGGAAGAAGAGGGTGTAGAAGAAGAGGAAGAGGAGGATGAACACGGGGATGCACTTTGTGGTGCATGCGGAGAAAACTACGCCTCTGATGAGTTCTGGATCTGCTGTGATATCTGTGAGAAGTGGTTCCATGGAAAGTGCGTCAAGATAACCCCAGCAAGGGCCGAGCATATTAAGCAGTACAAATGCCCTTCTTGTAGCAACAAGAGAGCACGTCCTTGA

Network for GWHGAAZE028288

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12165.9	Alfin	6	101	9.10E-51
PF00628.30	PHD	164	212	1.40E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Alfin-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0042393	molecular_function	histone binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.446
	SRR3591706	second leaf	8.393
	SRR3591707	mature leaf	11.220
	SRR3591708	Shoot apex	14.058
	SRR3591709	Stem	14.877
	SRR3591710	White floral bud	3.451
	SRR3591711	White flower	2.960
	SRR3591712	Green floral bud	3.851
	SRR3591713	Yellow flower	2.023
SRP173429	SRR8316895	Juvenile bud stage	12.408
	SRR8316896	Juvenile bud stage	17.971
	SRR8316897	Juvenile bud stage	2.116
	SRR8316894	Third green stage	5.361
	SRR8316900	Third green stage	13.509
	SRR8316901	Third green stage	13.363
	SRR8316898	Complete white stage	2.904
	SRR8316899	Complete white stage	18.529
	SRR8316903	Complete white stage	5.860
	SRR8316902	Silver flowering stage	4.018
	SRR8316904	Silver flowering stage	5.476
	SRR8316905	Silver flowering stage	1.963
	SRR8316906	Gold flowering stage	5.986
	SRR8316907	Gold flowering stage	9.421
	SRR8316908	Gold flowering stage	4.386
SRP132670	SRR6706286	Control	13.940
	SRR6706287	Light intensity 50%	14.027
	SRR6706288	Light intensity 20%	15.126
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.392
	CNS0095593	Slightly white alabastrum(diploid) 2	15.293
	CNS0095594	Slightly white alabastrum(diploid) 3	14.264
	CNS0095595	Whole white alabastrum(diploid) 2	10.570
	CNS0095596	Whole white alabastrum(diploid) 3	7.076
	CNS0095597	Whole white alabastrum(diploid) 4	7.484
	CNS0095598	Silvery flower (diploied) 1	15.101
	CNS0095599	Silvery flower (diploied) 2	13.895
	CNS0095600	Silvery flower (diploied) 3	10.900
	CNS0095601	Golden flower (diploid) 1	11.117
	CNS0095602	Golden flower (diploid) 2	10.692
	CNS0095603	Golden flower (diploid) 3	13.082
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.436
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.023
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.888
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.204
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.757
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.219
	CNS0095610	Silvery flower (tetraploid) 1	5.488
	CNS0095611	Silvery flower (tetraploid) 2	5.820
	CNS0095612	Silvery flower (tetraploid) 3	4.022
	CNS0095613	Golden flower (tetraploid) 1	5.671
	CNS0095614	Golden flower (tetraploid) 2	6.804
	CNS0095615	Golden flower (tetraploid) 3	3.972
CRA001975	CRR073297	Stem 1	21.008
	CRR073298	Stem 2	16.370
	CRR073299	Stem 3	22.646
	CRR073300	Leaf 1	18.343
	CRR073301	Leaf 2	14.890
	CRR073302	Leaf 3	18.926
	CRR073303	Juvenile bud 1	9.944
	CRR073304	Juvenile bud 2	9.071
	CRR073305	Juvenile bud 3	12.410
	CRR073306	Third green 1	3.206
	CRR073307	Third green 2	4.662
	CRR073308	Third green 3	5.143
	CRR073309	Second white 1	5.878
	CRR073310	Second white 2	3.815
	CRR073311	Second white 3	4.676
	CRR073312	Silver flowering 1	4.229
	CRR073313	Silver flowering 2	6.239
	CRR073314	Silver flowering 3	1.794
	CRR073315	Gold flowering 1	4.243
	CRR073316	Gold flowering 2	8.071
	CRR073317	Gold flowering 3	8.905
	CRR073318	Tawny withering 1	17.245
	CRR073319	Tawny withering 2	17.584
	CRR073320	Tawny withering 3	20.647