Gene detail

Detail information of GWHGAAZE028243

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280120.2	0	PREDICTED: endoglucanase 16-like [Vitis vinifera]
COG	YP_007159459.1	3E-74	Cellulase
Swissprot	tr\|Q8VYG3\|GUN16_ARATH	0	Endoglucanase 16 (Precursor)
trEMBL	tr\|F6H2T0\|F6H2T0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46615.1}
TAIR10	AT3G43860.1	2E-154	glycosyl hydrolase 9A4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	48175132	48182681	+
GWHAAZE00000008	mRNA	48175132	48182681	+
GWHAAZE00000008	exon	48175132	48175344	+
GWHAAZE00000008	exon	48176003	48176212	+
GWHAAZE00000008	exon	48176830	48177030	+
GWHAAZE00000008	exon	48178028	48178232	+
GWHAAZE00000008	exon	48180075	48180238	+
GWHAAZE00000008	exon	48181496	48181733	+
GWHAAZE00000008	exon	48182446	48182681	+
GWHAAZE00000008	CDS	48175132	48175344	+
GWHAAZE00000008	CDS	48176003	48176212	+
GWHAAZE00000008	CDS	48176830	48177030	+
GWHAAZE00000008	CDS	48178028	48178232	+
GWHAAZE00000008	CDS	48180075	48180238	+
GWHAAZE00000008	CDS	48181496	48181733	+
GWHAAZE00000008	CDS	48182446	48182681	+

Transcript Sequence
>GWHTAAZE028277 ATGGGGATGAATGCAAGAGCATTATGCACTGTGGCATGGTTGGTGGTGTTGCAAGGGTTATTTGTGGTTGGTGTTAATGGAGATTTTAATTACAAAGAAGCCCTTACAAAATCTCTTATTTTCTTGGAGGCACAAAGATCTGGAAAGCTCCCTCCCAACCATACCCTCTCTTGGAGAGGAGATTCTGCTCTTGAAGATGGCAAACTTGCCAATGTGGACCTAGTTGGAGGATACTATGATGCAGGGGACAATGTGAAATATGGGCTGCCAATGGCATTCACAGTGACCACACTTTCATGGGCAGCCAACTTCTATAAATATGAGCTCAAAGATGCTGGAGAGTTAGATAATACCCTTGCTGCTATTCGTTGGGGCACTGATTATCTTCTGAAATGCTCTTCTAAAAACTCCTTGTTCGTCCAGGTAGGGGATCCAGTAAAGGACCATGAATGTTGGATAAGGCCAGAGAACATGAACACACCAAGAACAGTGCTAAAGATAGACGCAAGCAATCCTGGTACTGAGTTGGCTGCCGAAACTTCCGCAGCATTGGCAGCTGCGTCTATCACTTTCAGAAGCTCAGATCATACATATTCCCATAGTCTCCTCAACAAAGCCAAAATGCTTTTTGAATTTGCGAAAACAAACAAAGGAACATATGATGGAGAATGTCCCTTCTATTGCTCATACTCAGGGTACAATGATGAACTAATGTGGGCAGCAACATGGTTATACATGGCCACCAGAAAGCCTGTTTATCTAAATTATGTCAAAGAGGAAGTCATTAGTGCTACTGTTGCTGAGTTTAACTGGGATCTTAAATACGCTGGGGGTTTAGTTATGATGAGAGATGGGGCAAATGCGCAATACGTGACGGGCACTGCTTTCTTGTTTACAGTATACAGTGATGTGTTGGCGAGACACAACCAACGCCTCAACTGCGGAGACAAACAGTTTAGTCCTTCCCACCTTATGGCTTTTGCAAAGCAACAGATGGATTATCTACTAGGGAAGAACCCAAAAGGAAGATCATACATGGTAGGGTTTGGGAACAACCCACCGACACAAGCCCACCACAGGGGTGCCTCAGTCCCCCCGCTGCCACCGGGAACCCCAATCAACTGCGGGATGACCTTCGTCTACTACTACAACAAGGACGCGCCCAATCCTAACGAGCTCACTGGCGCCATCGTTGGCGGACCTGACAAAAACGATGACTTCAATGACAAGCTTCCCCCGCTGCCACCGGGAACCCAGATCAACAGCGGCATGACCTTTGTCTACTACTACAATAAGGACGCTCCCAATCCTAACGCTTTCACTGGCGCCATCGTTGGTGGACCTGACAAAAACGATGACTTCAATGACAAGCGTACTCAATCGTCCATGACCGAGCCCACTACATACACCAACTCCCTTGCTGTTGGTGTTCTCACAAAACTAGCTAGACAGCGTTCGGTCTTTTGA

Network for GWHGAAZE028243

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.20	Glyco_hydro_9	31	281	2.50E-88
PF00759.20	Glyco_hydro_9	431	478	3.90E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01179	E3.2.1.4	Metabolic pathways	map01100
		Starch and sucrose metabolism	map00500
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.046
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.036
	SRR3591708	Shoot apex	0.116
	SRR3591709	Stem	0.332
	SRR3591710	White floral bud	18.917
	SRR3591711	White flower	0.753
	SRR3591712	Green floral bud	19.561
	SRR3591713	Yellow flower	0.078
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.037
	SRR8316897	Juvenile bud stage	0.018
	SRR8316894	Third green stage	0.062
	SRR8316900	Third green stage	11.924
	SRR8316901	Third green stage	6.361
	SRR8316898	Complete white stage	0.059
	SRR8316899	Complete white stage	0.215
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.477
	SRR8316904	Silver flowering stage	0.258
	SRR8316905	Silver flowering stage	0.285
	SRR8316906	Gold flowering stage	0.576
	SRR8316907	Gold flowering stage	0.354
	SRR8316908	Gold flowering stage	0.549
SRP132670	SRR6706286	Control	12.906
	SRR6706287	Light intensity 50%	14.349
	SRR6706288	Light intensity 20%	12.952
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.657
	CNS0095593	Slightly white alabastrum(diploid) 2	1.603
	CNS0095594	Slightly white alabastrum(diploid) 3	0.792
	CNS0095595	Whole white alabastrum(diploid) 2	44.208
	CNS0095596	Whole white alabastrum(diploid) 3	46.783
	CNS0095597	Whole white alabastrum(diploid) 4	86.494
	CNS0095598	Silvery flower (diploied) 1	0.881
	CNS0095599	Silvery flower (diploied) 2	2.012
	CNS0095600	Silvery flower (diploied) 3	0.709
	CNS0095601	Golden flower (diploid) 1	0.816
	CNS0095602	Golden flower (diploid) 2	0.667
	CNS0095603	Golden flower (diploid) 3	0.381
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.291
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.212
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.109
	CNS0095607	Whole white alabastrum(tetraploid) 1	70.473
	CNS0095608	Whole white alabastrum(tetraploid) 2	140.743
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.499
	CNS0095610	Silvery flower (tetraploid) 1	0.418
	CNS0095611	Silvery flower (tetraploid) 2	1.683
	CNS0095612	Silvery flower (tetraploid) 3	3.460
	CNS0095613	Golden flower (tetraploid) 1	0.500
	CNS0095614	Golden flower (tetraploid) 2	0.269
	CNS0095615	Golden flower (tetraploid) 3	1.820
CRA001975	CRR073297	Stem 1	0.693
	CRR073298	Stem 2	0.303
	CRR073299	Stem 3	0.322
	CRR073300	Leaf 1	22.460
	CRR073301	Leaf 2	7.529
	CRR073302	Leaf 3	1.620
	CRR073303	Juvenile bud 1	24.740
	CRR073304	Juvenile bud 2	18.460
	CRR073305	Juvenile bud 3	2.252
	CRR073306	Third green 1	8.418
	CRR073307	Third green 2	11.515
	CRR073308	Third green 3	7.371
	CRR073309	Second white 1	1.045
	CRR073310	Second white 2	1.180
	CRR073311	Second white 3	1.446
	CRR073312	Silver flowering 1	6.609
	CRR073313	Silver flowering 2	5.465
	CRR073314	Silver flowering 3	3.830
	CRR073315	Gold flowering 1	5.138
	CRR073316	Gold flowering 2	1.017
	CRR073317	Gold flowering 3	3.347
	CRR073318	Tawny withering 1	5.830
	CRR073319	Tawny withering 2	7.021
	CRR073320	Tawny withering 3	7.197