Gene detail

Detail information of GWHGAAZE028233

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006483642.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250-like [Citrus sinensis]
COG	YP_004429344.1	7E-17	leucine-rich repeat-containing protein
Swissprot	tr\|C0LGR9\|Y4312_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g31250 (Precursor)
trEMBL	tr\|A0A061GI23\|A0A061GI23_THECC	0	Leucine-rich repeat protein kinase family protein, putative {ECO:0000313\|EMBL:EOY29078.1}
TAIR10	AT4G31250.1	3E-145	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	47883348	47896875	+
GWHAAZE00000008	mRNA	47883348	47896875	+
GWHAAZE00000008	exon	47883348	47883531	+
GWHAAZE00000008	exon	47883864	47884280	+
GWHAAZE00000008	exon	47893630	47894241	+
GWHAAZE00000008	exon	47894688	47895038	+
GWHAAZE00000008	exon	47896553	47896875	+
GWHAAZE00000008	CDS	47883348	47883531	+
GWHAAZE00000008	CDS	47883864	47884280	+
GWHAAZE00000008	CDS	47893630	47894241	+
GWHAAZE00000008	CDS	47894688	47895038	+
GWHAAZE00000008	CDS	47896553	47896875	+

Transcript Sequence
>GWHTAAZE028267 ATGGCCTGTAATAACACACAATATTGGCTTCTTTCTGTGCTTAGCATATTGCTAACAAGCGTTGTTGTTTCTTCTCGTGGGGAATCCGAGGCAAAAACCCTTCTCAAGTTCAAGAATTCTTTATCCAACAACACAGCGTTGAATGGCTGGGATGAGTCCATAAGCATGTGCAGCGGTGATACTGTTAAGGCGAACTGGAATGGCGTGATTTGTCTTGATGGCAAGTTTTTCGGGTTGAGACTGGAAGGCATGGGACTTGGTGGCCGAATCGACACCGACATCCTTGCCGAATTGCCCTTTTTAGGTGCCATAAGTTTGATGAACAATAACTTCGAGGGGCCAATGCCTAACATCAACAAGCTTGGGGGTTTGCGCGGCTTTTTTATTTCGAATAACAAATTTTCGGGGGAGATACCCAGTGATGCCTTCTCTGGTACGAGGTCATTGAAGAGGGTTTATTTGTCAAATAATGAGTTCAAGGGTAAAATACCAAAATCACTTGGGAATTTGCCTAAGCTTGCCGAGGTGCACCTTGAGGGCAACAATTTTGAAGGTCCTATACCACCTGGGCTAAGCAACCAGAATTCTAGCTCATTTACTGGAAACCTTAACCTTTGTGGCAAGCCTCTCAAGCCATGCCCGCCTTCTAGGAAGCAAAACATCCCAAAGCTCGCTGTCATCATCATTGCGTCCGTGGGCTTTGCTTTGGTTGCTATAATTGCAGCTTACTTCTTCTTTCGCCGGTCCCAATCATCGAAACACAAAAATGCTAAATCAATCGAGGAAGATTTGCACATTACGGGTGAGGCAACCAAAGCCGACCCAACCGACAACGATTATCATCATTATAACAATTATGACAAGAAGAAGAAGGGAAGTAGTGAAAAATCAGGAAAGCTGTATTTTGTGAGGAATGATAGGGAGAGGTTTGAGTTGCAAGACTTGCTTAGGGCTTCAGCTGAAGTGTTGGGTAGTGGGTGTTTTGGTTCTTCTTACAAGGCTGTTCTTCTCTCGGGAGGGCCAGCATTAGTTGTGAAGAGGTATAAGCAAATGGGCAGTGTGGGCAAAGAGGACTTTTATGTGCATATGAGGAAACTAGGAGCCTTGTCTCACCCTAATTTGCTCCCTCTTGTGGCCTTTTACTACAAAAAGGAGGAAAAGCTTTTGATTAGTGATTTTGCTCATAATGGTAGCTTGGCTAGCCATCTCCATGGCAAACAAAGTCCTAACCAGCCAGGACTAGATTGGCCAACAAGGCTAAAAGTAGTAAAAGGAGTAGCAAAGGGATTGAGTTACCTCAACAAGGAGCTGAAGCTTCTAGTACCCCATGGTCACCTCAAGTCAACCAATGTGCTTTTGGACAATAACTATGAACCACTTGTAGCAGATTATGGGCTGTTGCCTGTGGTTAACAAGGAACATGCTCAACAATTAATGGCTGCCTACAAGTCACCTGATTTCACTCAAAATAACCTTATAAACAACAAGACTGATGTTTGGTGCCTTGGGATTCTAATTCTTGAGATTTTGACCGGAAAATTCCCAGCCAATTATCTTACACAAGGAAAGGGCAACAATGTTGATTTGGCAAGTTGGGTGAAGTCGGTGGTGAGAGAAGAGTGGACGGGGGAGGTGTTCGATAAAGAGATGAAAGGGAGAGAGAAAGGGGAGGGAGAAATGCTGAAACTGCTCAAGATCGGAATGTGTTGCTGCGAATGGGATGTGGAGAAAAGGTGGGATTTAGAACATGCGATTTCGAAGATTCAAGAGTTGAAAGAGAGGGAGAATATTGATGAGGATGAAAATGAATATGATTCTTTTTATTCTTCTTCTATAGCAACAATGATTGAGGGAGATTTCTCTTTCTCTGTCACCAACTCCAAGTGA

Network for GWHGAAZE028233

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	29	71	8.80E-08
PF13855.7	LRR_8	124	183	4.00E-08
PF07714.18	PK_Tyr_Ser-Thr	321	524	2.10E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.061
	SRR3591706	second leaf	0.101
	SRR3591707	mature leaf	0.078
	SRR3591708	Shoot apex	0.101
	SRR3591709	Stem	0.130
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.047
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.088
	SRR8316897	Juvenile bud stage	0.035
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.008
	SRR8316902	Silver flowering stage	0.025
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.025
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.007
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.002
	CNS0095594	Slightly white alabastrum(diploid) 3	0.031
	CNS0095595	Whole white alabastrum(diploid) 2	0.026
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.025
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.028
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.025
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.023
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.007
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.033
	CNS0095610	Silvery flower (tetraploid) 1	0.117
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.006
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.005
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.005
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.018
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.021
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.044