Gene detail

Detail information of GWHGAAZE028187

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU22082.1	0	hypothetical protein MIMGU_mgv1a001807mg [Erythranthe guttata]
COG	YP_005269820.1	3E-25	serine/threonine-protein kinase PrkC
Swissprot	tr\|Q8S8S7\|PUB34_ARATH	4E-128	Serine/threonine-protein kinase
trEMBL	tr\|A0A022Q0K8\|A0A022Q0K8_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU22082.1}
TAIR10	AT2G24370.1	1E-174	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	45188740	45192887	+
GWHAAZE00000008	mRNA	45188740	45192887	+
GWHAAZE00000008	exon	45188740	45188790	+
GWHAAZE00000008	exon	45189196	45189624	+
GWHAAZE00000008	exon	45191084	45191842	+
GWHAAZE00000008	exon	45192804	45192887	+
GWHAAZE00000008	CDS	45188740	45188790	+
GWHAAZE00000008	CDS	45189196	45189624	+
GWHAAZE00000008	CDS	45191084	45191842	+
GWHAAZE00000008	CDS	45192804	45192887	+

Transcript Sequence
>GWHTAAZE028221 ATGGATATGTACAGTACAGCCTGCAAAGAAGCACTATCTGCAAAACAGAAGGCAAGGGAGCTCCAAAGGTGGAAGCTAGAAGAGCAACAAAGACTAGAAGAGGCTCGGCTAGCCGAGGAAACGGCATTAGCCATTGCGGAGAAGGAAAAGGCCAAGTCCAAGGCGGCAATTGAGCACGCCGAAGCAGCTCAAAGGCTAGCTGAGCTAGAGGCACAAAAGAGAATCAACGCGGAGATGAAAGCGCTCAAAGAAGTGGAAGAGAAGAATAAGGTTTTAAACGCACTAGCACAATCTGATGTCAGGTACAGGAAGTACACAATTGAGGAGATTGAAGCTGCAACAAATTTCTTCTCACAATCTCTCAAGATTGGTGAAGGTGGTTATGGGCCCGTTTATAAGTGTTATTTGGACCATACACCCGTTGCTGTTAAGGTTCTAAGACCTGATGCGGCTCAAGGCAGATCTCAGTTTCAACAAGAGGTTGAAGTGTTGAGCTGTATAAGGCATCCAAACATGGTCCTCCTACTCGGCGCTTGCCCTGAATACGGATGCTTAGTATACGAGTACATGTCCAACGGAAGCCTGGAGGACTGCCTAATGCGTCGAGGAAATAATGGACCGGTCCTCTCGTGGCAGCACCGATTCCGAATCACGGCCGAGATCGGCACCGGCCTCCTCTTCCTCCACCAAACCAAGCCTGAACCACTGGTGCACCGGGACCTCAAACCGGCCAACATATTGCTTGACCGCAACTTTGTGAGCAAGATTAGCGATGTGGGCCTAGCTAGGCTGGTCCCACCTTCAGTGGCCGATAATGTAACCCAGTATCGAATGACCTCAACTGCCGGAACTTTTTGTTATATAGATCCCGAATACCAACAAACGGGCATGCTTGGTATAAAATCAGACATTTATTCTTTGGGGATCATGTTTTTGCAGATAATTACGGCTAAATCGCCGATGGGTTTAGCTCATCATGTAGAGAGGGCTATTGAGAAGGGGACATTTGAGGAGATGTTGGATCCTGCTGTGGCTGATTGGCCTGTGGAAGAGGCTTTGAGCTTTGCTAAGATATCTCTACAATGTGCTGAGTTGAGGAGGAAAGATAGGCCTGATCTTGCTAAGGTGGTTATGCCTGAGCTTGATAGATTAAGAACACTTGCTGAAGAGAGTATGCCCCATTCTATTCTTTATGGTCCTAACCCATCTCCTACTCACAGCCAAATTTCCTTGTCTCAAGACAATCAGGCTATAGCTCAAGGAGCAGATCAAGCACAGGATGCTGATGGATCAGCAGAACAAGTACCACTCATGAAGCATTAG

Network for GWHGAAZE028187

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	119	375	2.40E-40

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXb

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.066
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.184
	SRR3591708	Shoot apex	0.365
	SRR3591709	Stem	0.666
	SRR3591710	White floral bud	38.776
	SRR3591711	White flower	1.958
	SRR3591712	Green floral bud	61.332
	SRR3591713	Yellow flower	0.449
SRP173429	SRR8316895	Juvenile bud stage	5.035
	SRR8316896	Juvenile bud stage	9.818
	SRR8316897	Juvenile bud stage	4.774
	SRR8316894	Third green stage	5.314
	SRR8316900	Third green stage	32.002
	SRR8316901	Third green stage	35.623
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.124
	SRR8316903	Complete white stage	0.053
	SRR8316902	Silver flowering stage	1.521
	SRR8316904	Silver flowering stage	1.811
	SRR8316905	Silver flowering stage	0.066
	SRR8316906	Gold flowering stage	0.103
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.078
SRP132670	SRR6706286	Control	17.621
	SRR6706287	Light intensity 50%	19.447
	SRR6706288	Light intensity 20%	17.344
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.550
	CNS0095593	Slightly white alabastrum(diploid) 2	17.368
	CNS0095594	Slightly white alabastrum(diploid) 3	24.404
	CNS0095595	Whole white alabastrum(diploid) 2	66.947
	CNS0095596	Whole white alabastrum(diploid) 3	79.500
	CNS0095597	Whole white alabastrum(diploid) 4	94.084
	CNS0095598	Silvery flower (diploied) 1	0.477
	CNS0095599	Silvery flower (diploied) 2	3.748
	CNS0095600	Silvery flower (diploied) 3	0.959
	CNS0095601	Golden flower (diploid) 1	0.730
	CNS0095602	Golden flower (diploid) 2	0.760
	CNS0095603	Golden flower (diploid) 3	1.029
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.322
	CNS0095605	Slightly white alabastrum(tetraploid) 2	43.559
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.184
	CNS0095607	Whole white alabastrum(tetraploid) 1	107.420
	CNS0095608	Whole white alabastrum(tetraploid) 2	128.377
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.686
	CNS0095610	Silvery flower (tetraploid) 1	0.447
	CNS0095611	Silvery flower (tetraploid) 2	2.453
	CNS0095612	Silvery flower (tetraploid) 3	8.053
	CNS0095613	Golden flower (tetraploid) 1	0.947
	CNS0095614	Golden flower (tetraploid) 2	0.129
	CNS0095615	Golden flower (tetraploid) 3	5.234
CRA001975	CRR073297	Stem 1	6.353
	CRR073298	Stem 2	6.837
	CRR073299	Stem 3	3.201
	CRR073300	Leaf 1	38.458
	CRR073301	Leaf 2	23.656
	CRR073302	Leaf 3	10.055
	CRR073303	Juvenile bud 1	23.230
	CRR073304	Juvenile bud 2	21.927
	CRR073305	Juvenile bud 3	1.495
	CRR073306	Third green 1	9.512
	CRR073307	Third green 2	9.755
	CRR073308	Third green 3	7.313
	CRR073309	Second white 1	0.397
	CRR073310	Second white 2	1.418
	CRR073311	Second white 3	1.602
	CRR073312	Silver flowering 1	6.475
	CRR073313	Silver flowering 2	10.251
	CRR073314	Silver flowering 3	3.228
	CRR073315	Gold flowering 1	5.223
	CRR073316	Gold flowering 2	1.644
	CRR073317	Gold flowering 3	3.737
	CRR073318	Tawny withering 1	5.162
	CRR073319	Tawny withering 2	5.735
	CRR073320	Tawny withering 3	5.226