Gene detail

Detail information of GWHGAAZE028183

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007011459.1	0	Leucine-rich repeat protein kinase family protein, putative [Theobroma cacao]
COG	YP_004429344.1	4E-11	leucine-rich repeat-containing protein
Swissprot	tr\|C0LGR9\|Y4312_ARATH	2E-170	Probable LRR receptor-like serine/threonine-protein kinase At4g31250 (Precursor)
trEMBL	tr\|A0A061GI23\|A0A061GI23_THECC	0	Leucine-rich repeat protein kinase family protein, putative {ECO:0000313\|EMBL:EOY29078.1}
TAIR10	AT4G31250.1	4E-132	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	45037866	45050894	+
GWHAAZE00000008	mRNA	45037866	45050894	+
GWHAAZE00000008	exon	45037866	45038217	+
GWHAAZE00000008	exon	45047648	45048262	+
GWHAAZE00000008	exon	45048699	45049049	+
GWHAAZE00000008	exon	45050569	45050894	+
GWHAAZE00000008	CDS	45037866	45038217	+
GWHAAZE00000008	CDS	45047648	45048262	+
GWHAAZE00000008	CDS	45048699	45049049	+
GWHAAZE00000008	CDS	45050569	45050894	+

Transcript Sequence
>GWHTAAZE028217 ATGGGACTTGGTGGCCGAATCGACACCGACATCCTTGCCGAATTGCCCTTTTTAGGTGCCATAAGTTTGATGAACAATAACTTCGAGGGGCCAATGCCTAACATCAACAAGCTTGGGGGTTTGCGCGGCTTTTTTATTTCGAATAACAAATTTTCGGGGGAGATACCCAGTGATGCCTTCTCTGGCACGAGGTCATTGAAGAGGGTTTATTTGTCAAATAATGAGTTCAAGGGTAAAATACCAAAATCACTTGGGAATTTGCCTAAGCTTGCCGAGGTGCACCTTGAGGGCAACAATTTTGAAGGTCCTATACCACCTGGGCTAAGCAACCAGAATTCTAGCTCATTTACTGGAAACCTTAACCTTTGTGGCAAGCCTCTCAAGCCATGCCCGCCTTCCAGGAAGCGAAACATCCCAAAGCTCGCTGTCATCATCATTGCGTCCGTGGGCTTTGCTTTGGTTGCTATAATTGCAGCTTACTTCTTCTTTCGCCGGTCCCAATCATCGAAACACAAAAATGCTAAATCAATCGAGGAAGATTTGCACATTACGGGTGAGGCATCCAAAGCCGACCCAACCGACGACAACGATTATCATCATTATAACAATTATGACAAGAAGAAGAAGGGAAGTAGTGAAAAATCAGGAAAGCTGTATTTTGTGAGGAATGATAGGGAGAGGTTTGAGTTGCAAGACTTGCTTAGGGCTTCAGCTGAAGTGTTGGGTAGTGGGTGTTTTGGTTCTTCTTACAAGGCTGTTCTTCTCTCGGGAGGGCCAGCATTAGTTGTGAAGAGGTATAAGCAAATGGGCAATGTGGGCAAAGAGGACTTTTATGTGCATATGAGGAAACTAGGAGCCTTGTCTCACCCTAATTTGCTCCCTCTTGTGGCCTTTTACTACAAAAAGGAGGAAAAGCTTTTGATTAGTGATTTTGCTCATAATGGTAGCTTGGCTAGCCATCTCCATGGCAAACAAAGTCCTAACCAGCCAGGACTAGACTGGCCAACAAGGCTAAAAGTAGTAAAAGGAGTAGCAAAGGGATTGAGTTACCTCAACAAGGAGCTGAAGCTTCTAGTACCCCATGGCCACCTCAAGTCAACCAATGTGCTTTTGGACAATAACTATGAACCACTTGTAGCAGATTATGGGCTGTTGCCTGTGGTTAACAAGGAACATGCTCAACAATTAATGGCTGCCTACAAGTCACCTGATTTCACTCAAAATAACCTTATAAACAACAAGACTGATGTTTGGTGCCTAGGGATTCTAATTCTTGAGATTTTGACCGGAAAATTCCCAGCCAATTATCTTACACAAGGAAAGGGCAACAATGTTGATTTGGCAAGTTGGGTGAAGTCGGTGGTGAGAGAAGAGTGGACGGGGGAGGTGTTCGATAAAGAGATGAAAGGGAGAGAGAAAGGGGAGGGAGAAATGCTGAAACTGCTCAAGATCGGAATGTGTTGCTGCGAATGGGATGTGGAGAAAAGGTGGGATTTAGAACATGCGATTTCGAAGATTCAAGAGTTGAAAGAGAGGGAGAATTTTGATGAGGATGAAAATGAATATGATTCTTTTTATTCTTCTTCTTCTATAGCAACAATGATTGAGGGAGATTTCTCTTTCTCTGTCACCAACTCCAAGTGA

Network for GWHGAAZE028183

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	41	100	3.30E-08
PF07714.18	PK_Tyr_Ser-Thr	239	444	1.60E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.018
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.102
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.085
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.047
	SRR8316905	Silver flowering stage	0.052
	SRR8316906	Gold flowering stage	0.053
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.016
	SRR6706287	Light intensity 50%	0.081
	SRR6706288	Light intensity 20%	0.008
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.018
	CNS0095593	Slightly white alabastrum(diploid) 2	0.435
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.152
	CNS0095596	Whole white alabastrum(diploid) 3	0.158
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.093
	CNS0095602	Golden flower (diploid) 2	0.023
	CNS0095603	Golden flower (diploid) 3	0.015
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.030
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.093
	CRR073301	Leaf 2	0.054
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.159
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.013
	CRR073306	Third green 1	0.049
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.009
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.307
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.085
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.036
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.116
	CRR073320	Tawny withering 3	0.000