Gene detail

Detail information of GWHGAAZE028179

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KFK44803.1	7.15722E-91	hypothetical protein AALP_AA1G305000 [Arabis alpina]
COG	YP_004775215.1	4E-18	RHS repeat-associated core domain-containing protein
Swissprot	tr\|C0LGN2\|Y3148_ARATH	2E-83	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 (Precursor)
trEMBL	tr\|V4LYE0\|V4LYE0_EUTSA	3E-106	Uncharacterized protein {ECO:0000313\|EMBL:ESQ44923.1}
TAIR10	AT3G14840.2	1E-74	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	44600029	44606191	-
GWHAAZE00000008	mRNA	44600029	44606191	-
GWHAAZE00000008	exon	44600029	44600267	-
GWHAAZE00000008	exon	44600363	44600573	-
GWHAAZE00000008	exon	44601129	44601239	-
GWHAAZE00000008	exon	44601870	44601903	-
GWHAAZE00000008	exon	44603859	44603894	-
GWHAAZE00000008	exon	44603989	44604048	-
GWHAAZE00000008	exon	44604238	44604300	-
GWHAAZE00000008	exon	44604499	44604570	-
GWHAAZE00000008	exon	44604742	44604813	-
GWHAAZE00000008	exon	44604897	44604968	-
GWHAAZE00000008	exon	44605059	44605130	-
GWHAAZE00000008	exon	44605715	44605786	-
GWHAAZE00000008	exon	44605880	44605951	-
GWHAAZE00000008	exon	44606050	44606191	-
GWHAAZE00000008	five_prime_UTR	44606067	44606191	-
GWHAAZE00000008	CDS	44606050	44606066	-
GWHAAZE00000008	CDS	44605880	44605951	-
GWHAAZE00000008	CDS	44605715	44605786	-
GWHAAZE00000008	CDS	44605059	44605130	-
GWHAAZE00000008	CDS	44604897	44604968	-
GWHAAZE00000008	CDS	44604742	44604813	-
GWHAAZE00000008	CDS	44604499	44604570	-
GWHAAZE00000008	CDS	44604238	44604300	-
GWHAAZE00000008	CDS	44603989	44604048	-
GWHAAZE00000008	CDS	44603859	44603894	-
GWHAAZE00000008	CDS	44601870	44601903	-
GWHAAZE00000008	CDS	44601129	44601239	-
GWHAAZE00000008	CDS	44600363	44600573	-
GWHAAZE00000008	CDS	44600029	44600267	-

Transcript Sequence
>GWHTAAZE028213 AAATTAAAAAACAATCCACCTTTTCAATTTGTAAAGTACATGGTAATAATTTTGATCTCATTCATTCATATAGAGACCTCACACGCAACTACCTGAACGGTACCATCCCTCCACAATGGGGTTCTATGCAGCTAGTCAACATCTCCCTGAATGGGAATCGCCTGACGGGTTCAATCCTAAAAGAATTTGGAAACATCAGTACATTGGCGAATCTAACCCTCAGGTACAATATGCTGTCGGGTGCTATTCTACCGGAGCTTGGGAATCTTCCTCGCATTCAGAGAATGGCCATTCAGGCTAGTGGTTTATCCGGGCCAATTCCTTCTGGCATTGCTCTTTTGACAAAATTGTCCGGCTTGAGGATTAGTGATTTAAATGGAAACAAACAATCTTTTCCTTTGCTTAGCAATATGAAAAACCTTAAGACACTGATTTTGAGAAGTTGCAATATTATCGGGGAGTTACCTAAATATCTTGGGGAAATGACAAAACTGAAAGTCCTAGACGTCAGCTTTAACAAGCTAAGTGGACACATTCCAAGCAGTTTCGTTGGTCTATCAAAGACAGATTACATTTATTTAACTGGAAACATGCTAGCTGGACCAATGCCCCCTTGGATGCTGAAAGGAGAAAACATTGACCTTTCATACAACAATCTTACAATTGGAAGCTCAGGGGGCTGTGAACAAGGGAGTGCTAACTTGTTTGGAAGCTCTTCAAAGAGCGAACCGTCCCTTGGAAGGCGTATTTTTGATGTTTCTGTTCAGAAAAAGGAAACAGCGTATCTGTGGGCACCGTGGTTGGGATTGTGGTTGCAGCAGTGGCATTTTCCATCTTCCTGGTTCTTGCTATCCTGTGGTAGAAAGGCTGTCTTGGACGGACTTCTAGCGGACGGGGCAATAATTGCTGTGAAGCAGGTTTCTTCAAAGTCGAGGCAAGGGAATCGTGAATTTGTTAATGAAATAGGCATGATTTCAGCCCTTCAACACCCACATCTCGTAAAGCTATACGGATGCTGTATTGAAGGAAATCAATTGTTGTTAGTATATGAGTATATGGAAAATAACAGCCTTGCTCGTGCCTTATTTGGCCCAGAAGAAATGCAGTTAAATTTGGATTGGCCAACACGGCAAAAAATCTGTGTTGGTATAGCAAAAGGTTTGGCTTATCTGCATGAAGAATCGAGACTAAAGATTGTGCACAGAGACATCAAGGCCACCAATGTGCTGCTTGATAAGAATCTTGACCCTAAGATATCTGACTTTGGTTTGGCGAAACTTGATGAAGAGGAGAATACCCACATTAGCACCCGTATAGCTGGAACTTAG

Network for GWHGAAZE028179

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	98	157	8.90E-09
PF07714.18	PK_Tyr_Ser-Thr	259	391	7.20E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.185
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.052
	SRR3591709	Stem	0.036
	SRR3591710	White floral bud	0.087
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.214
	SRR3591713	Yellow flower	0.027
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.017
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.033
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.007
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000