Gene detail

Detail information of GWHGAAZE028149

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002322015.2	0	hypothetical protein POPTR_0015s02010g [Populus trichocarpa]
COG	YP_001958461.1	4E-14	hypothetical protein Aasi_1443
Swissprot	tr\|Q9FID6\|Y5392_ARATH	3E-58	Probable receptor-like protein kinase At5g39020 (Precursor)
trEMBL	tr\|B9IDV9\|B9IDV9_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEF06142.2}
TAIR10	AT1G66910.1	1E-57	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	42543459	42547469	-
GWHAAZE00000008	mRNA	42543459	42547469	-
GWHAAZE00000008	exon	42547451	42547469	-
GWHAAZE00000008	exon	42546360	42547001	-
GWHAAZE00000008	exon	42543909	42544565	-
GWHAAZE00000008	exon	42543459	42543742	-
GWHAAZE00000008	CDS	42547451	42547469	-
GWHAAZE00000008	CDS	42546360	42547001	-
GWHAAZE00000008	CDS	42543909	42544565	-
GWHAAZE00000008	CDS	42543459	42543742	-

Transcript Sequence
>GWHTAAZE028183 ATGTTTCCGCAAGACGAAGGTCGCCTTGGAGTTGAAGGTACAAATGATGGGTGTAATATTACCAATTGTGGGGAAAATGGTCCGCCCATTCGATTTCCATTTCGACTTAAACCTAACCAGCCAAAACATTGCGGCTGCCCAGGGTTTGAGCTATCTTGCAACCACATGAACCAAACAGTGCTCGAACTTCCAGTCGCTTTAGAGGTGTTGGTTGAGGAAATTGACTACATATCTCAAAGAATTCTAGTACATGATCCCCAAAATTGCTTTCCGGCACAGGTTCTGAGGCTCAATCGATCTGCTTCTCCTTTCAATTTCACTACAACGTCCTCTGATTTTGTTTTGTTCAATTGTTCGCCAGCTGAAAGAAATATTCAAACCTTGGTCCCTTGCCTCAGTGGCCCCGGGTATCAAATTTATGCAGTCTACTACCAGGGAATTACATGGAATGATGAATTAACCAATTGTGTTAAGATCCATAACATCTCATCAGTTCCATTTGATTTGTTTGAGTACCCGCAAAGCGATCTTTGGCTGTCTTGGAAGGAACCAAATTGTCACATGTGCAAATCAAAAGGCAAAATGTGTAGGTGGAAGAATTATAACACTACAGCAGCAGGGGAACCTGAACTTCTTGAATGTGTGCCCAAAACAACTACAGTATTAGGGGCAATTTTCCTTTGCCAGGTAATTGTCACATTCTACCTAATTTACAACTCTTTCAAAAGAAAGAAAGAAGACCAAGTAAAAGTTAGAAGATTTTTGGAGGATTACAAAGCTCTCAAGCTCAGCAGATACTCGTTTGCTGATATTAAAAAGATAACGAACAAATTCAAGGACAAATTGGGAGAGGTTTCTTATGGAACTGTGTTCAAAGGTAAGCTTTCGAGCAAAATATTTGTCGCCGTTAAGGTCCTCGAAAGCTCCATGGAAAATGGCAAAGAGTTTATTAATGAAGTTGGAGCAATGGGCTTGATCCACCACGTCAACGTGGTTCGTTTGGTTGGGTTTTGTGCCGATGGGATTAATAGAGCTCTCATTTATGAGTTCTTACCAAACAAGTCCTTAGAAAAGTTGATATTCTCCGAAACTCAAAACAAAACATTCCTTGGTTGGGAAAAATTACAAGACATTGCATTAGGCACTGCCGAGGGAATCGAGTATCTACACCAAGGTTGCGATCACCAAATACTTCATTTCGACATTAAACCTCATAATATCTTGTTGGACGATAATTTTAATCCAAAAATAGCTGATTTTGGGCAAGCCAAATTGTGCCCCAAGGATCAAAGCAAGGTATCAATGACGACCGCTAGAGAATTGATTTATGACCGTTTATCTCGAGGAGAAGAGTTGGGGATCAAAATTGAAGAAGATGAACACGCTGAAATTGCAAAGAAGCTAACGATTGTGGGACTTTGTTGCATTCAATGGTCACCGTTAGATCGTCCTCCCATGAAGACTGTGGTTCAAATGCTCGAAGGGAAAGGAGACGTGCTCGCCATTCCTTTGAATCCTTTTGCTTCTATAGGCCGACGCGAGAGTTCAAACAAGCCTGTAAGAGCTGTTAATAGAGAGTTAGAAGTTATTAGCGAAGTATAA

Network for GWHGAAZE028149

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13947.7	GUB_WAK_bind	18	85	6.10E-15
PF00069.26	Pkinase	279	435	1.80E-29

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRK10L-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030247	molecular_function	polysaccharide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.017
	SRR3591706	second leaf	0.152
	SRR3591707	mature leaf	2.116
	SRR3591708	Shoot apex	0.041
	SRR3591709	Stem	0.223
	SRR3591710	White floral bud	3.530
	SRR3591711	White flower	1.019
	SRR3591712	Green floral bud	1.750
	SRR3591713	Yellow flower	1.294
SRP173429	SRR8316895	Juvenile bud stage	0.450
	SRR8316896	Juvenile bud stage	0.688
	SRR8316897	Juvenile bud stage	1.062
	SRR8316894	Third green stage	0.054
	SRR8316900	Third green stage	0.085
	SRR8316901	Third green stage	0.302
	SRR8316898	Complete white stage	0.225
	SRR8316899	Complete white stage	0.866
	SRR8316903	Complete white stage	0.223
	SRR8316902	Silver flowering stage	0.130
	SRR8316904	Silver flowering stage	0.337
	SRR8316905	Silver flowering stage	0.074
	SRR8316906	Gold flowering stage	0.295
	SRR8316907	Gold flowering stage	0.336
	SRR8316908	Gold flowering stage	0.559
SRP132670	SRR6706286	Control	0.482
	SRR6706287	Light intensity 50%	0.315
	SRR6706288	Light intensity 20%	0.191
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.218
	CNS0095593	Slightly white alabastrum(diploid) 2	0.100
	CNS0095594	Slightly white alabastrum(diploid) 3	0.280
	CNS0095595	Whole white alabastrum(diploid) 2	0.039
	CNS0095596	Whole white alabastrum(diploid) 3	0.026
	CNS0095597	Whole white alabastrum(diploid) 4	0.104
	CNS0095598	Silvery flower (diploied) 1	0.353
	CNS0095599	Silvery flower (diploied) 2	0.543
	CNS0095600	Silvery flower (diploied) 3	0.177
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.171
	CNS0095603	Golden flower (diploid) 3	0.159
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.085
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.028
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.037
	CRR073307	Third green 2	0.109
	CRR073308	Third green 3	0.080
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.043
	CRR073315	Gold flowering 1	0.048
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.461
	CRR073319	Tawny withering 2	0.517
	CRR073320	Tawny withering 3	0.035