Detail information of GWHGAAZE028141


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010247166.10PREDICTED: protein arginine N-methyltransferase 1.5 [Nelumbo nucifera]
COGYP_003265314.16E-10histone-arginine N-methyltransferase
Swissprottr|Q8GWT4|ANM15_ARATH0Protein arginine N-methyltransferase 1.5
trEMBLtr|D7SU76|D7SU76_VITVI0Protein arginine N-methyltransferase {ECO:0000256|PIRNR:PIRNR015894}
TAIR10AT4G31120.10SHK1 binding protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene4197745842001745-
GWHAAZE00000008mRNA4197745842001745-
GWHAAZE00000008exon4200161142001745-
GWHAAZE00000008exon4199606741996184-
GWHAAZE00000008exon4199263741992746-
GWHAAZE00000008exon4199133141991396-
GWHAAZE00000008exon4198963241989723-
GWHAAZE00000008exon4198944141989516-
GWHAAZE00000008exon4198924941989335-
GWHAAZE00000008exon4198881641988900-
GWHAAZE00000008exon4198792641988017-
GWHAAZE00000008exon4198778141987816-
GWHAAZE00000008exon4198757741987645-
GWHAAZE00000008exon4198600141986069-
GWHAAZE00000008exon4198530941985362-
GWHAAZE00000008exon4198463241984706-
GWHAAZE00000008exon4198344241983534-
GWHAAZE00000008exon4198323641983339-
GWHAAZE00000008exon4198191741981965-
GWHAAZE00000008exon4198174841981834-
GWHAAZE00000008exon4198088941980994-
GWHAAZE00000008exon4197884641978933-
GWHAAZE00000008exon4197843441978527-
GWHAAZE00000008exon4197745841977541-
GWHAAZE00000008CDS4200161142001745-
GWHAAZE00000008CDS4199606741996184-
GWHAAZE00000008CDS4199263741992746-
GWHAAZE00000008CDS4199133141991396-
GWHAAZE00000008CDS4198963241989723-
GWHAAZE00000008CDS4198944141989516-
GWHAAZE00000008CDS4198924941989335-
GWHAAZE00000008CDS4198881641988900-
GWHAAZE00000008CDS4198792641988017-
GWHAAZE00000008CDS4198778141987816-
GWHAAZE00000008CDS4198757741987645-
GWHAAZE00000008CDS4198600141986069-
GWHAAZE00000008CDS4198530941985362-
GWHAAZE00000008CDS4198463241984706-
GWHAAZE00000008CDS4198344241983534-
GWHAAZE00000008CDS4198323641983339-
GWHAAZE00000008CDS4198191741981965-
GWHAAZE00000008CDS4198174841981834-
GWHAAZE00000008CDS4198088941980994-
GWHAAZE00000008CDS4197884641978933-
GWHAAZE00000008CDS4197843441978527-
GWHAAZE00000008CDS4197745841977541-
Transcript Sequence

Network for GWHGAAZE028141

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17285.3PRMT5_TIM1202754.30E-32
PF05185.17PRMT52824515.70E-72
PF17286.3PRMT5_C4546202.80E-52
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02516PRMT5, HSL7 RNA transport map03013
MAPK signaling pathway - yeastmap04011
Cell cycle - yeastmap04111

Gene Ontology

GO term OntologyName
GO:0006479biological_processprotein methylation
GO:0035246biological_processpeptidyl-arginine N-methylation
GO:0008168molecular_functionmethyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.788
SRR3591706second leaf4.958
SRR3591707mature leaf4.443
SRR3591708Shoot apex19.487
SRR3591709Stem9.519
SRR3591710White floral bud4.098
SRR3591711White flower5.960
SRR3591712Green floral bud9.977
SRR3591713Yellow flower2.963
SRP173429 SRR8316895Juvenile bud stage 9.120
SRR8316896Juvenile bud stage 11.093
SRR8316897Juvenile bud stage 5.827
SRR8316894Third green stage 5.277
SRR8316900Third green stage 13.646
SRR8316901Third green stage 14.555
SRR8316898Complete white stage 1.685
SRR8316899Complete white stage 12.590
SRR8316903Complete white stage 2.516
SRR8316902Silver flowering stage1.358
SRR8316904Silver flowering stage1.819
SRR8316905Silver flowering stage0.547
SRR8316906Gold flowering stage 2.204
SRR8316907Gold flowering stage 1.660
SRR8316908Gold flowering stage 2.812
SRP132670SRR6706286Control11.696
SRR6706287Light intensity 50%13.180
SRR6706288Light intensity 20%13.930
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.119
CNS0095593Slightly white alabastrum(diploid) 29.583
CNS0095594Slightly white alabastrum(diploid) 39.484
CNS0095595Whole white alabastrum(diploid) 27.165
CNS0095596Whole white alabastrum(diploid) 36.752
CNS0095597Whole white alabastrum(diploid) 46.257
CNS0095598Silvery flower (diploied) 17.590
CNS0095599Silvery flower (diploied) 27.008
CNS0095600Silvery flower (diploied) 33.728
CNS0095601Golden flower (diploid) 15.274
CNS0095602Golden flower (diploid) 24.819
CNS0095603Golden flower (diploid) 34.751
CNS0095604Slightly white alabastrum(tetraploid) 15.521
CNS0095605Slightly white alabastrum(tetraploid) 26.210
CNS0095606Slightly white alabastrum(tetraploid) 310.883
CNS0095607Whole white alabastrum(tetraploid) 13.351
CNS0095608Whole white alabastrum(tetraploid) 21.581
CNS0095609Whole white alabastrum(tetraploid) 38.285
CNS0095610Silvery flower (tetraploid) 12.844
CNS0095611Silvery flower (tetraploid) 22.103
CNS0095612Silvery flower (tetraploid) 32.268
CNS0095613Golden flower (tetraploid) 10.839
CNS0095614Golden flower (tetraploid) 22.689
CNS0095615Golden flower (tetraploid) 30.354
CRA001975CRR073297Stem 119.896
CRR073298Stem 216.510
CRR073299Stem 316.707
CRR073300Leaf 116.280
CRR073301Leaf 216.419
CRR073302Leaf 315.941
CRR073303Juvenile bud 115.458
CRR073304Juvenile bud 27.466
CRR073305Juvenile bud 315.015
CRR073306Third green 10.495
CRR073307Third green 20.319
CRR073308Third green 30.974
CRR073309Second white 10.623
CRR073310Second white 20.819
CRR073311Second white 30.831
CRR073312Silver flowering 10.082
CRR073313Silver flowering 20.024
CRR073314Silver flowering 30.027
CRR073315Gold flowering 17.648
CRR073316Gold flowering 212.316
CRR073317Gold flowering 37.419
CRR073318Tawny withering 111.507
CRR073319Tawny withering 212.935
CRR073320Tawny withering 315.236