Gene detail

Detail information of GWHGAAZE028132

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006365673.1	2.3817E-120	PREDICTED: dnaJ protein homolog isoform X2 [Solanum tuberosum]
COG	YP_001940904.1	7E-21	DnaJ-class molecular chaperone with C-terminal Zn finger domain
Swissprot	tr\|Q04960\|DNJH_CUCSA	1E-111	DnaJ protein homolog (Precursor)
trEMBL	tr\|A0A061FWX1\|A0A061FWX1_THECC	7E-118	DNAJ {ECO:0000313\|EMBL:EOY19294.1}
TAIR10	AT5G22060.1	3E-42	DNAJ homologue 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	41753444	41755466	+
GWHAAZE00000008	mRNA	41753444	41755466	+
GWHAAZE00000008	exon	41753444	41753593	+
GWHAAZE00000008	exon	41754107	41754272	+
GWHAAZE00000008	exon	41754626	41754720	+
GWHAAZE00000008	exon	41754790	41754847	+
GWHAAZE00000008	exon	41754983	41755180	+
GWHAAZE00000008	exon	41755363	41755466	+
GWHAAZE00000008	CDS	41753444	41753593	+
GWHAAZE00000008	CDS	41754107	41754272	+
GWHAAZE00000008	CDS	41754626	41754720	+
GWHAAZE00000008	CDS	41754790	41754847	+
GWHAAZE00000008	CDS	41754983	41755180	+
GWHAAZE00000008	CDS	41755363	41755466	+

Transcript Sequence
>GWHTAAZE028166 ATGTTTGGGAGGGGGCCTAAGAAAAGCGACAATACTAAGTACTATGAGATCTTAGGGGTTCCTAAAAACGCTTCGCAGGATGATCTCAAGAAGGCTTATCGTAAAGCTGCCATCAAGAATCATCCCGATAAAGGCGGTGATCCTGAAAAGTTTAAAGAGCTTGCCCAAGCTTATGAGGTTCTAAGCGATCCACAGAAGTGTGAGATTTATGATCAATATGGTGAGGATGCTCTCAAGGAAGGAATCGGTCCTGGAGCTGGTGGGCATGATCCATTTGACGTCTTCCAATCATTTTTCGGCGGTAACCATTTTGGTGGGTCGAAGTCGGGTGCTTCAATGAAATGTGTCGGGTGCCAAGGTTCTGGAATGAAAGTTTCCATTAGACACCTGGGATCATCTGTCATCCAGCAGTGCAAGGGTGGGAAGGTTGTGCAGGAGAAGAAGGTGTTGGAAGTTGTCGTAGAGAAGGCCGGAAACCGTCACAGGGGACATAGTGTTTGTTGTACAACAGAAAGAACACCCCAAGTTCAAGAGGAAGGTGATGACCTATTCCTTGAACACACCTTGACACTCACTGAAGCGCTTTGCGGTTTTAAGTTTATCTTGACTCATCTAGATAACAGGCAGCTCCTAATCAAATCCGAACCCAGAGAAGTTATTAAGCCTGATCAATTCAAGGGAATAAACGATGAGGGAATGCCAATTTACCAGAGGCCATTTATGAGAGGCAAGTTGTATATTCACTTCACAGTTGATTTCCTGATTCCTTGA

Network for GWHGAAZE028132

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00226.32	DnaJ	13	71	2.50E-22
PF01556.19	DnaJ_C	165	253	2.10E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09503	DNAJA2	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0051082	molecular_function	unfolded protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.064
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.071
	SRR3591709	Stem	0.107
	SRR3591710	White floral bud	0.031
	SRR3591711	White flower	0.088
	SRR3591712	Green floral bud	0.049
	SRR3591713	Yellow flower	0.103
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.092
	SRR8316901	Third green stage	0.220
	SRR8316898	Complete white stage	0.032
	SRR8316899	Complete white stage	0.723
	SRR8316903	Complete white stage	0.101
	SRR8316902	Silver flowering stage	0.056
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.091
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.855
	SRR6706287	Light intensity 50%	0.328
	SRR6706288	Light intensity 20%	0.212
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.575
	CNS0095593	Slightly white alabastrum(diploid) 2	0.232
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.111
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.070
	CNS0095598	Silvery flower (diploied) 1	0.401
	CNS0095599	Silvery flower (diploied) 2	0.055
	CNS0095600	Silvery flower (diploied) 3	0.196
	CNS0095601	Golden flower (diploid) 1	0.219
	CNS0095602	Golden flower (diploid) 2	0.146
	CNS0095603	Golden flower (diploid) 3	0.129
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.040
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.058
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.044
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.078
	CNS0095610	Silvery flower (tetraploid) 1	0.057
	CNS0095611	Silvery flower (tetraploid) 2	0.061
	CNS0095612	Silvery flower (tetraploid) 3	0.030
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.339
	CRR073298	Stem 2	0.070
	CRR073299	Stem 3	0.073
	CRR073300	Leaf 1	0.207
	CRR073301	Leaf 2	0.153
	CRR073302	Leaf 3	0.278
	CRR073303	Juvenile bud 1	0.223
	CRR073304	Juvenile bud 2	0.145
	CRR073305	Juvenile bud 3	0.087
	CRR073306	Third green 1	0.085
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.133
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.059
	CRR073311	Second white 3	0.018
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.095
	CRR073315	Gold flowering 1	0.907
	CRR073316	Gold flowering 2	0.160
	CRR073317	Gold flowering 3	0.028
	CRR073318	Tawny withering 1	1.239
	CRR073319	Tawny withering 2	2.646
	CRR073320	Tawny withering 3	2.056