Detail information of GWHGAAZE028128


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010247166.10PREDICTED: protein arginine N-methyltransferase 1.5 [Nelumbo nucifera]
COGYP_001537048.10.0000005hypothetical protein Sare_2196
Swissprottr|Q8GWT4|ANM15_ARATH0Protein arginine N-methyltransferase 1.5
trEMBLtr|D7SU76|D7SU76_VITVI0Protein arginine N-methyltransferase {ECO:0000256|PIRNR:PIRNR015894}
TAIR10AT4G31120.20SHK1 binding protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene4156716641596455-
GWHAAZE00000008mRNA4156716641596455-
GWHAAZE00000008exon4159632141596455-
GWHAAZE00000008exon4159077241590889-
GWHAAZE00000008exon4158740441587513-
GWHAAZE00000008exon4158609741586162-
GWHAAZE00000008exon4158436041584451-
GWHAAZE00000008exon4158416941584244-
GWHAAZE00000008exon4158398041584063-
GWHAAZE00000008exon4158354741583631-
GWHAAZE00000008exon4158265741582748-
GWHAAZE00000008exon4158250441582539-
GWHAAZE00000008exon4158230041582368-
GWHAAZE00000008exon4158078641580854-
GWHAAZE00000008exon4158011541580168-
GWHAAZE00000008exon4157946941579543-
GWHAAZE00000008exon4157825141578343-
GWHAAZE00000008exon4157805341578156-
GWHAAZE00000008exon4157661741576665-
GWHAAZE00000008exon4157644841576534-
GWHAAZE00000008exon4157557741575682-
GWHAAZE00000008exon4157360441573691-
GWHAAZE00000008exon4157318641573271-
GWHAAZE00000008exon4156762141567805-
GWHAAZE00000008exon4156716641567195-
GWHAAZE00000008CDS4159632141596455-
GWHAAZE00000008CDS4159077241590889-
GWHAAZE00000008CDS4158740441587513-
GWHAAZE00000008CDS4158609741586162-
GWHAAZE00000008CDS4158436041584451-
GWHAAZE00000008CDS4158416941584244-
GWHAAZE00000008CDS4158398041584063-
GWHAAZE00000008CDS4158354741583631-
GWHAAZE00000008CDS4158265741582748-
GWHAAZE00000008CDS4158250441582539-
GWHAAZE00000008CDS4158230041582368-
GWHAAZE00000008CDS4158078641580854-
GWHAAZE00000008CDS4158011541580168-
GWHAAZE00000008CDS4157946941579543-
GWHAAZE00000008CDS4157825141578343-
GWHAAZE00000008CDS4157805341578156-
GWHAAZE00000008CDS4157661741576665-
GWHAAZE00000008CDS4157644841576534-
GWHAAZE00000008CDS4157557741575682-
GWHAAZE00000008CDS4157360441573691-
GWHAAZE00000008CDS4157318641573271-
GWHAAZE00000008CDS4156762141567805-
GWHAAZE00000008CDS4156716641567195-
Transcript Sequence

Network for GWHGAAZE028128

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17285.3PRMT5_TIM371211.50E-23
PF05185.17PRMT52814503.70E-72
PF17286.3PRMT5_C4535622.70E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02516PRMT5, HSL7 RNA transport map03013
MAPK signaling pathway - yeastmap04011
Cell cycle - yeastmap04111

Gene Ontology

GO term OntologyName
GO:0006479biological_processprotein methylation
GO:0035246biological_processpeptidyl-arginine N-methylation
GO:0008168molecular_functionmethyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.024
SRR3591706second leaf3.021
SRR3591707mature leaf1.499
SRR3591708Shoot apex11.945
SRR3591709Stem4.467
SRR3591710White floral bud2.937
SRR3591711White flower5.056
SRR3591712Green floral bud8.198
SRR3591713Yellow flower2.551
SRP173429 SRR8316895Juvenile bud stage 5.699
SRR8316896Juvenile bud stage 6.747
SRR8316897Juvenile bud stage 3.287
SRR8316894Third green stage 3.552
SRR8316900Third green stage 11.121
SRR8316901Third green stage 6.381
SRR8316898Complete white stage 0.745
SRR8316899Complete white stage 8.930
SRR8316903Complete white stage 1.801
SRR8316902Silver flowering stage0.941
SRR8316904Silver flowering stage1.114
SRR8316905Silver flowering stage0.431
SRR8316906Gold flowering stage 1.667
SRR8316907Gold flowering stage 0.825
SRR8316908Gold flowering stage 1.795
SRP132670SRR6706286Control6.925
SRR6706287Light intensity 50%7.312
SRR6706288Light intensity 20%7.828
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.874
CNS0095593Slightly white alabastrum(diploid) 24.785
CNS0095594Slightly white alabastrum(diploid) 33.825
CNS0095595Whole white alabastrum(diploid) 23.275
CNS0095596Whole white alabastrum(diploid) 32.678
CNS0095597Whole white alabastrum(diploid) 43.177
CNS0095598Silvery flower (diploied) 13.617
CNS0095599Silvery flower (diploied) 22.860
CNS0095600Silvery flower (diploied) 32.330
CNS0095601Golden flower (diploid) 13.268
CNS0095602Golden flower (diploid) 22.608
CNS0095603Golden flower (diploid) 32.165
CNS0095604Slightly white alabastrum(tetraploid) 17.182
CNS0095605Slightly white alabastrum(tetraploid) 28.637
CNS0095606Slightly white alabastrum(tetraploid) 315.500
CNS0095607Whole white alabastrum(tetraploid) 13.348
CNS0095608Whole white alabastrum(tetraploid) 22.635
CNS0095609Whole white alabastrum(tetraploid) 39.921
CNS0095610Silvery flower (tetraploid) 13.989
CNS0095611Silvery flower (tetraploid) 25.218
CNS0095612Silvery flower (tetraploid) 32.907
CNS0095613Golden flower (tetraploid) 10.813
CNS0095614Golden flower (tetraploid) 22.304
CNS0095615Golden flower (tetraploid) 31.041
CRA001975CRR073297Stem 110.834
CRR073298Stem 211.906
CRR073299Stem 39.890
CRR073300Leaf 19.694
CRR073301Leaf 210.470
CRR073302Leaf 310.692
CRR073303Juvenile bud 18.653
CRR073304Juvenile bud 24.952
CRR073305Juvenile bud 38.840
CRR073306Third green 10.222
CRR073307Third green 20.010
CRR073308Third green 30.249
CRR073309Second white 10.671
CRR073310Second white 20.575
CRR073311Second white 30.562
CRR073312Silver flowering 10.130
CRR073313Silver flowering 20.242
CRR073314Silver flowering 30.025
CRR073315Gold flowering 14.573
CRR073316Gold flowering 27.486
CRR073317Gold flowering 34.612
CRR073318Tawny withering 18.406
CRR073319Tawny withering 27.791
CRR073320Tawny withering 37.894