Gene detail

Detail information of GWHGAAZE028120

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAD12055.1	1.317E-143	DnaJ protein [Hevea brasiliensis]
COG	YP_003497134.1	8E-22	molecular chaperone DnaJ
Swissprot	tr\|P43644\|DNJH_ATRNU	8E-129	DnaJ protein homolog ANJ1 (Precursor)
trEMBL	tr\|M0ZPC7\|M0ZPC7_SOLTU	1E-149	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400005019}
TAIR10	AT3G44110.1	3E-80	DNAJ homologue 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	41287091	41289338	+
GWHAAZE00000008	mRNA	41287091	41289338	+
GWHAAZE00000008	exon	41287091	41287240	+
GWHAAZE00000008	exon	41287753	41288104	+
GWHAAZE00000008	exon	41288309	41288542	+
GWHAAZE00000008	exon	41288625	41288694	+
GWHAAZE00000008	exon	41288780	41288823	+
GWHAAZE00000008	exon	41289010	41289338	+
GWHAAZE00000008	CDS	41287091	41287240	+
GWHAAZE00000008	CDS	41287753	41288104	+
GWHAAZE00000008	CDS	41288309	41288542	+
GWHAAZE00000008	CDS	41288625	41288694	+
GWHAAZE00000008	CDS	41288780	41288823	+
GWHAAZE00000008	CDS	41289010	41289338	+

Transcript Sequence
>GWHTAAZE028154 ATGTTTGGGAGGGGGCCTAAGAAAAGCGACAATACTAAGTACTATGGGATCTTAGGAGTTCCTAAAAACGCTTCGCAGGATGATCTCAAGAAGGCTTATCGTAAAGCTGCCATCAAGAACCATTCCGATAAAGGCGGCGATCCTGAAAAGTTTAAAGAGCTTGCCCAAGCTTATGAGGTTCTAAGCGATCCAGAGAAGCATGAGATTATGATCAATATGGTGAGGATGCTCTCAAGGAAGGAATGGGTCCTGGATTTGGTGGGCATGATCCATTTGACGTCTTCCAATCATTTTTCGGTGGTAACCATTTTGGTGGTAAGTGTTAGATACAAGCATCGGCCTGAACTGGACTTTGCTATTTATGTGATTAACTGTGAAGAGGTTTTATTGATTGTTAAAAGTCCATTGTGCTCAGGTGGAAGCAGCAGTAGAGGCAGAAGGCAAAGAAGGGGGGAAGATGTTATTCATCCTCTAAAGGTTTCACTAGAGGATCTCTACAATGGTTCTGGAATGAAAGTTTCTATTAGACACCTGGGTTCATCTGTCATCCAGCAGGTGCAGCATCCTTGCAATGAATGCAAGGGAACTGGTGAAGCTATAAGTGACAAAGATCGTTGCCCTCAGTGCAAGGGTGGGAAGGTTGTGCAGGAGAAGAAGGCGTTGGAAGTTGTCGTAGAGAAGGGTATGCAAAATGGACAGAGGATTATTTTCCCTGGGGAGGCTGATGAAGCAGTATCCAGAAACCGTCACAGGGGACATAGTGTTGGTTGTACAACAGAAAGAACACCCCTAGTTCAAGAGGAAGGGCAGCTCCTCATCAAATCCGAACCCGGAGAAGTTATTAAGCCTGATCAATTCAAGGGAATAAACGATGAGGGAATGCCAATTTACCAGAGGCCATTTATGAGAGGCAAGTTGTATATTCACTTCACAGTTGATTTCCCTGATTCCTTGAGCAGTGAGCAGTGCAAGGGTCCGGTGTCTCTGTTGCCTCCTAGGCCTTCACAGGCGATAACAGATATGGAGCTGGATGAATGTGAGGAAACTACTCTTCACGATATTAACATTGAGGTGGAGATGCGTAGGAAGCAGCATCAGCAGGCTCAAGAGGCATACGATGAAGATGATGATGATTATGATAATTGTAACGTGCAGAGGGTGCAGTGTCCTCAGCAATGA

Network for GWHGAAZE028120

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00226.32	DnaJ	13	68	1.80E-17
PF01556.19	DnaJ_C	155	245	5.90E-10
PF00684.20	DnaJ_CXXCXGXG	167	212	1.00E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09503	DNAJA2	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0031072	molecular_function	heat shock protein binding
GO:0051082	molecular_function	unfolded protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.052
	SRR3591709	Stem	0.051
	SRR3591710	White floral bud	0.056
	SRR3591711	White flower	0.093
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.496
	SRR8316896	Juvenile bud stage	0.484
	SRR8316897	Juvenile bud stage	0.301
	SRR8316894	Third green stage	0.077
	SRR8316900	Third green stage	0.262
	SRR8316901	Third green stage	0.486
	SRR8316898	Complete white stage	0.220
	SRR8316899	Complete white stage	0.707
	SRR8316903	Complete white stage	0.107
	SRR8316902	Silver flowering stage	0.121
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.055
	SRR8316906	Gold flowering stage	0.082
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.458
SRP132670	SRR6706286	Control	1.574
	SRR6706287	Light intensity 50%	1.255
	SRR6706288	Light intensity 20%	1.134
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.072
	CNS0095593	Slightly white alabastrum(diploid) 2	1.182
	CNS0095594	Slightly white alabastrum(diploid) 3	0.941
	CNS0095595	Whole white alabastrum(diploid) 2	1.039
	CNS0095596	Whole white alabastrum(diploid) 3	0.436
	CNS0095597	Whole white alabastrum(diploid) 4	0.507
	CNS0095598	Silvery flower (diploied) 1	1.000
	CNS0095599	Silvery flower (diploied) 2	0.016
	CNS0095600	Silvery flower (diploied) 3	0.134
	CNS0095601	Golden flower (diploid) 1	1.072
	CNS0095602	Golden flower (diploid) 2	0.436
	CNS0095603	Golden flower (diploid) 3	0.364
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.200
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.190
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.256
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.099
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.086
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.056
	CNS0095610	Silvery flower (tetraploid) 1	0.037
	CNS0095611	Silvery flower (tetraploid) 2	0.081
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.040
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.024
CRA001975	CRR073297	Stem 1	0.645
	CRR073298	Stem 2	0.407
	CRR073299	Stem 3	0.630
	CRR073300	Leaf 1	1.242
	CRR073301	Leaf 2	0.722
	CRR073302	Leaf 3	0.265
	CRR073303	Juvenile bud 1	0.339
	CRR073304	Juvenile bud 2	0.085
	CRR073305	Juvenile bud 3	0.272
	CRR073306	Third green 1	0.006
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.077
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.028
	CRR073311	Second white 3	0.059
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.994
	CRR073316	Gold flowering 2	1.565
	CRR073317	Gold flowering 3	0.276
	CRR073318	Tawny withering 1	2.481
	CRR073319	Tawny withering 2	1.234
	CRR073320	Tawny withering 3	0.844