Gene detail

Detail information of GWHGAAZE028114

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009367198.1	0	PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Pyrus x bretschneideri]
COG	YP_005885555.1	5E-133	RNA helicase, ATP-dependent DEAH box, HrpA type
Swissprot	tr\|O22899\|DHX15_ARATH	0	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|M5XUH2\|M5XUH2_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ22755.1}
TAIR10	AT3G62310.1	0	RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	41139205	41143682	+
GWHAAZE00000008	mRNA	41139205	41143682	+
GWHAAZE00000008	exon	41139205	41139501	+
GWHAAZE00000008	exon	41140147	41140349	+
GWHAAZE00000008	exon	41140462	41141546	+
GWHAAZE00000008	exon	41141959	41142084	+
GWHAAZE00000008	exon	41142191	41142378	+
GWHAAZE00000008	exon	41142534	41142652	+
GWHAAZE00000008	exon	41143559	41143682	+
GWHAAZE00000008	CDS	41139205	41139501	+
GWHAAZE00000008	CDS	41140147	41140349	+
GWHAAZE00000008	CDS	41140462	41141546	+
GWHAAZE00000008	CDS	41141959	41142084	+
GWHAAZE00000008	CDS	41142191	41142378	+
GWHAAZE00000008	CDS	41142534	41142652	+
GWHAAZE00000008	CDS	41143559	41143682	+

Transcript Sequence
>GWHTAAZE028148 ATGGGTTCAGAGCGGAAAAGGAATATAAGTTTGTTCGATGTGGTGGATGATAGTTCCTCAGTGGCGGCGAAGGCACTCAAAGCAGCTGCTAACGGAGGAATGGCCAACAGCACGACGACGATTTCTTCTATGATGAACAGGTGGAATGGTAGGCCTTACTCGCAGAGGTATTGCGAGATACTAGAGGTAAGGAAGAATCTGCCGGTATGGCACCAGAAAGAGGAGTTCTTGAAGGTCTTAAAACAAAATCAAACCCTTATCCTTGTCGGCGAAACCGGTAGTGGTAAAACCACCCAGATTCCTCAGTTTGTTTTGGAAGCTATAGAGGTGGAGAGCGCAGATAAGCGCAAGAAGTTTATGGTTGGATGCACCCAGCCTCGGAGAGTGGCTGCAATGTCCGTTTCTCGTCGAGTTGCTGAAGAGATGGATGTAACTATTGGAGAGGAAGTAGGTTATAGCATCCGTTTTGAAGACTGCAGTAGTTCAAGAACTGTTTTGAAGTATTTAACTGATGGTATGCTTTTAAGAGAAGCCATGACCGATCCACTTTTGGAAAGGTATAAAGTAATAATTCTTGATGAGGCTCACGAAAGAACTTTGGCAACAGATGTCTTGTTTGGGCTATTGAAGGAAGTGCTGAAAAACAGACCTGATCTGAAACTAGTTGTGATGAGTGCTACTCTTGAGGCTGAAAAGTTTCAGGGTTATTTTTATGGTGCTCCTCTCATGAAAGTTCCTGGACGGCTTCATCCTGTCGAGATTTTTTACACGCAAGATCCGGAGAGGGATTATCTTGAAGCAGCCATTCGAACGGTTGTGCAGATACACTTGTATGAACCCCCTGGTGACGTATTTGTTTTTCTCACTGGAGAGGAGGAGATAGAGGATGCATGTCGCAAAATAACAAAAGAAGTTGGTAATATGGGAGATACCGTGGGGCCTGTGAAAGTTGTGCCTCTGTATTCAACACTTCCTCCTGCTATGCAGCAAAAGATATTTGACCCTGCTCCACCTCCACTTACTGAAGGTGGTCCGGCTGGAAGGAAGATTGTAGTGTCAACAAACATTGCAGAAACTTCTTTGACCATAGATGGCATAGTTTATGTCATAGATCCTGGGTTTGCTAAACAGAAAGTGTATAACCCACGAGTACGTGTTGAATCATTGTTGGTCTCCCCAATATCAAAGGCAAGTGCTCACCAGAGGTCAGGGCGTGCTGGAAGAACTCAACCCGGCAAATGTTTCAGACTTTACACAGAGAGAAGTTTCCATAATGATCTGCAGCCACAGACGTTCCCAGAGATACTTCGGTCAAACCTTGCAAATACGGTTCTCACTCTGAAGAAACTAGGGATAGATGACCTTGTACATTTTGATTTTATGGACCCTCCTGCCCCTGAGACACTGATGAGAGCACTGGAGGTATTGAATTACTTGGGAGCACTGGATGATGAGGGAAACTTGACCAAGCTTGGTGAGATCATGAGTGAATTTCCCCTAGATCCTCAGATGGCTAAGATGCTTGTTGTCAGCGCTGAATTCAATTGTTCAAATGAAATTCTTTCGATATCTGCTATGCTTTCAGTACCCAATTGCTTTGTCCGGCCTAGGGAGGCTCAAAAGGCTGCAGATGAAGCGAAAGCTCGGTTTGGGCACATTGATGGGGATCACCTCACACTCTTGAATGTATACCATGCATACAAGCAAAACAATGAGGATCAATCATGGTGCTACGAAAATTTTGTGAACCAAAGGGCACTTAAATCTGCGGATAGTGTGAGACAACAGCTAGCTCGGATCATGGCCAGGTTTAACATCAAGCTATGCAGCACAGATTTTAACAGCCGGGAATACTACCTCAATATCAGAAAGGCTATGTTAGCTGGTTATTTCATGCAGGTAGTTCACTTGCACCCATCAAATTGCTTGGACCACAAGCCGGAGTGGGTCATTTATAATGAGTATGTCTTGACAAGTAGGAATTTCATCCGTATGGTAACAGATGTTCGTGGTGAATGGTTGATTGATATTGCACCACACTACTACGATCTTGCGAACTTCCCGAATTGTGAGGCAAAGCGAGCCCTGGAGAAACTTTATAAGAAACGGGAGAGAGAGGAGGATAGCAAAAACAGAAAGTAG

Network for GWHGAAZE028114

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13401.7	AAA_22	82	224	2.20E-08
PF00271.32	Helicase_C	272	409	1.00E-09
PF04408.24	HA2	472	560	8.10E-25
PF07717.17	OB_NTP_bind	632	681	5.50E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12820	DHX15, PRP43	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0004386	molecular_function	helicase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.791
	SRR3591706	second leaf	15.728
	SRR3591707	mature leaf	17.529
	SRR3591708	Shoot apex	23.688
	SRR3591709	Stem	21.259
	SRR3591710	White floral bud	25.189
	SRR3591711	White flower	27.903
	SRR3591712	Green floral bud	23.863
	SRR3591713	Yellow flower	21.457
SRP173429	SRR8316895	Juvenile bud stage	10.534
	SRR8316896	Juvenile bud stage	14.274
	SRR8316897	Juvenile bud stage	11.255
	SRR8316894	Third green stage	6.349
	SRR8316900	Third green stage	17.950
	SRR8316901	Third green stage	17.228
	SRR8316898	Complete white stage	5.627
	SRR8316899	Complete white stage	21.048
	SRR8316903	Complete white stage	11.058
	SRR8316902	Silver flowering stage	6.006
	SRR8316904	Silver flowering stage	9.234
	SRR8316905	Silver flowering stage	3.720
	SRR8316906	Gold flowering stage	13.995
	SRR8316907	Gold flowering stage	10.875
	SRR8316908	Gold flowering stage	17.732
SRP132670	SRR6706286	Control	21.554
	SRR6706287	Light intensity 50%	20.821
	SRR6706288	Light intensity 20%	20.713
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.803
	CNS0095593	Slightly white alabastrum(diploid) 2	10.856
	CNS0095594	Slightly white alabastrum(diploid) 3	7.284
	CNS0095595	Whole white alabastrum(diploid) 2	8.150
	CNS0095596	Whole white alabastrum(diploid) 3	7.553
	CNS0095597	Whole white alabastrum(diploid) 4	8.066
	CNS0095598	Silvery flower (diploied) 1	15.513
	CNS0095599	Silvery flower (diploied) 2	12.706
	CNS0095600	Silvery flower (diploied) 3	17.106
	CNS0095601	Golden flower (diploid) 1	9.919
	CNS0095602	Golden flower (diploid) 2	17.479
	CNS0095603	Golden flower (diploid) 3	15.801
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.916
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.316
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.725
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.483
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.937
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.561
	CNS0095610	Silvery flower (tetraploid) 1	24.496
	CNS0095611	Silvery flower (tetraploid) 2	22.160
	CNS0095612	Silvery flower (tetraploid) 3	20.113
	CNS0095613	Golden flower (tetraploid) 1	13.227
	CNS0095614	Golden flower (tetraploid) 2	22.482
	CNS0095615	Golden flower (tetraploid) 3	18.078
CRA001975	CRR073297	Stem 1	18.295
	CRR073298	Stem 2	16.267
	CRR073299	Stem 3	14.137
	CRR073300	Leaf 1	17.666
	CRR073301	Leaf 2	15.235
	CRR073302	Leaf 3	11.505
	CRR073303	Juvenile bud 1	11.590
	CRR073304	Juvenile bud 2	8.217
	CRR073305	Juvenile bud 3	15.976
	CRR073306	Third green 1	5.569
	CRR073307	Third green 2	4.353
	CRR073308	Third green 3	5.099
	CRR073309	Second white 1	4.189
	CRR073310	Second white 2	5.508
	CRR073311	Second white 3	7.154
	CRR073312	Silver flowering 1	6.567
	CRR073313	Silver flowering 2	5.829
	CRR073314	Silver flowering 3	4.902
	CRR073315	Gold flowering 1	9.379
	CRR073316	Gold flowering 2	14.149
	CRR073317	Gold flowering 3	5.467
	CRR073318	Tawny withering 1	12.611
	CRR073319	Tawny withering 2	13.914
	CRR073320	Tawny withering 3	11.664