Gene detail

Detail information of GWHGAAZE028084

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007040924.1	0	Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
COG	YP_003640725.1	2E-24	serine/threonine protein kinase
Swissprot	tr\|C0LGF4\|FEI1_ARATH	0	LRR receptor-like serine/threonine-protein kinase FEI 1 (Precursor)
trEMBL	tr\|A0A061G6D7\|A0A061G6D7_THECC	0	Leucine-rich repeat protein kinase family protein isoform 1 {ECO:0000313\|EMBL:EOY25425.1}
TAIR10	AT1G31420.2	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	38086536	38104085	-
GWHAAZE00000008	mRNA	38086536	38104085	-
GWHAAZE00000008	exon	38086536	38086754	-
GWHAAZE00000008	exon	38088500	38088633	-
GWHAAZE00000008	exon	38089720	38089965	-
GWHAAZE00000008	exon	38092266	38092598	-
GWHAAZE00000008	exon	38093009	38093161	-
GWHAAZE00000008	exon	38095217	38095308	-
GWHAAZE00000008	exon	38096718	38096789	-
GWHAAZE00000008	exon	38096878	38096949	-
GWHAAZE00000008	exon	38099571	38099642	-
GWHAAZE00000008	exon	38100010	38100066	-
GWHAAZE00000008	exon	38101531	38101602	-
GWHAAZE00000008	exon	38101707	38101778	-
GWHAAZE00000008	exon	38102858	38102993	-
GWHAAZE00000008	exon	38103989	38104085	-
GWHAAZE00000008	CDS	38103989	38104085	-
GWHAAZE00000008	CDS	38102858	38102993	-
GWHAAZE00000008	CDS	38101707	38101778	-
GWHAAZE00000008	CDS	38101531	38101602	-
GWHAAZE00000008	CDS	38100010	38100066	-
GWHAAZE00000008	CDS	38099571	38099642	-
GWHAAZE00000008	CDS	38096878	38096949	-
GWHAAZE00000008	CDS	38096718	38096789	-
GWHAAZE00000008	CDS	38095217	38095308	-
GWHAAZE00000008	CDS	38093009	38093161	-
GWHAAZE00000008	CDS	38092266	38092598	-
GWHAAZE00000008	CDS	38089720	38089965	-
GWHAAZE00000008	CDS	38088500	38088633	-
GWHAAZE00000008	CDS	38086536	38086754	-

Transcript Sequence
>GWHTAAZE028118 ATGGGCATTTTCCTTGCGAATTTCCAAGGACCATTGCTTTTATACATTCTATTGCTTTACACTCTGGTGAACAGAACCAGATCACTCACTCCTGATGGTCAAGCACTTGTTAACTTTAGGACGAACATTATTAGTTCAGATGGTGTTACTCAGCAGTGGAGACCAGAGGATCCTGACCCATGTGGGTGGAAAGGAGTAGAATGTGATCCAAAATCCAAGAGAGTTGTATCCTTGAGTCTTTCTAATCACAAGTTGAGCGGACCCATATCTGCGGACATCGGGAAGCTAGACCAATTGAAGTTTTTAGCGCTTCATGACAATAATTTTTATGGGGATATTCCTCCGGCATTGGGAAATTGTACAGAGTTGCTATCATTGTGCTTGCGTGCGTGGTGGAAAGAGATGAAGTTGCCTTCTGATGTGCACGATCCTTGGTTTTTGCAGGGTAACTACTTAAGTGGGTTTGTTCCCAATGAACTAGGAAATCTTTCGGAGCTTGAACGACTGGATATCTCAAGCAACTCTCTTAGTGGATCTATTCCTTCATCTCTTGGGAAATTGGAGAAACTTGTAATTTTCAATGTGTCAGCAAATTTTCTTGTTGGACCAATACCATCTGGCGGTGCTTTTGAGAAGTTCGCGAAGGAATCCTTCGTTGGAAATCGTGGTTTGTGTGGGAAACAAATAAATGTGGCATGCAAAAATGACACTGGTGGTCCTTCAGCAAACTCACAGCCTCCAGGTGGAAAGAAGAACTCTGGGCGTCTACTTATTAGTGCATCTGCTACTGTGGGTGCCCTCCTTCTGGTTGCCCTCATGTGCTTCTGGGGCTGTTTCCTTTATAAGAAACTTGGTAGAAATGATGGAACAGGCCTTGCAATGGATGTTAGTGGAGGTGCTTCAATCGTGATGTTTCATGGAGACTTGCCGTACTCGTCAAAGGATATCATTAAGAAATTAGAGACTCTGAACGAAGAACACATAATCGGTTCTGGAGGTTTTGGAACGGTGTACAAGCTTGCAATGGATGATGGAAAGGTGTTTGCCTTGAAAAGGATCCTCAAACTCAATGAGGGTTTTGATCGTTTTTTCGAAAGGGAGCTCGAAATTCTTGGAAGCATTAAACACCGTTACCTAGTGAATCTTCGAGGATACTGCAACTCTCCAACATCAAAACTGTTGATTTATGATTTCTTACCTGGTGGCAGTCTCGACGAAGCTCTCCATGAAAGATCAGAGCAACTAGACTGGGATTCAAGGATAAATATTATTGCGGGAGCCGCAAAAGGTCTTGCCTATTTGCACCATGATTGTTCCCCTAGAATTATACACCGAGACATAAAGTCGAGCAACATTCTACTTGATGGCAATTTGGAGGCTCGAGTATCTGACTTTGGACTGGCGAAATTGTTGGAGGATGAGGAATCTCACATCACGACCATTGTTGCTGGAACGTTTGGGTACCTGGCTCCAGAGTATATGCAGAGTGGTAGAGCAACAGAAAAGACCGATGTTTACAGTTTCGGGGTTCTTGTTCTTGAAGTTGTGAGTGGAAAGAGGCCCACTGATGCCTCCTTCATCGAGAAGGGCCTCAACATTGTTGGCTGGTTGAATTTTCTGGTGACGGAAAATAGGCAAAGGGAGATGGTTGATATGCAATGTGAAGGGGTACAAACAGAAAGCCTAGACGCATTGCTTTCAATAGCCATACAGTGCGTTTCTTCGGGGCCAGAGGAGCGCCCTACGATGCATAGGGTAGTCCAAATACTTGAATCTGAAGTTATGACTCCATGCCCTAGCGACTTCTACGATTCCAATTCTGATTGA

Network for GWHGAAZE028084

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	31	69	1.50E-09
PF00069.26	Pkinase	325	588	6.20E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XIIIa

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	71.391
	SRR3591706	second leaf	95.025
	SRR3591707	mature leaf	96.557
	SRR3591708	Shoot apex	57.750
	SRR3591709	Stem	77.634
	SRR3591710	White floral bud	35.986
	SRR3591711	White flower	36.166
	SRR3591712	Green floral bud	60.976
	SRR3591713	Yellow flower	23.505
SRP173429	SRR8316895	Juvenile bud stage	34.766
	SRR8316896	Juvenile bud stage	42.825
	SRR8316897	Juvenile bud stage	22.197
	SRR8316894	Third green stage	28.537
	SRR8316900	Third green stage	65.927
	SRR8316901	Third green stage	66.369
	SRR8316898	Complete white stage	19.731
	SRR8316899	Complete white stage	86.387
	SRR8316903	Complete white stage	32.793
	SRR8316902	Silver flowering stage	16.146
	SRR8316904	Silver flowering stage	28.186
	SRR8316905	Silver flowering stage	13.131
	SRR8316906	Gold flowering stage	31.673
	SRR8316907	Gold flowering stage	33.611
	SRR8316908	Gold flowering stage	32.165
SRP132670	SRR6706286	Control	39.714
	SRR6706287	Light intensity 50%	47.498
	SRR6706288	Light intensity 20%	51.677
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.550
	CNS0095593	Slightly white alabastrum(diploid) 2	35.581
	CNS0095594	Slightly white alabastrum(diploid) 3	27.252
	CNS0095595	Whole white alabastrum(diploid) 2	33.821
	CNS0095596	Whole white alabastrum(diploid) 3	32.882
	CNS0095597	Whole white alabastrum(diploid) 4	35.865
	CNS0095598	Silvery flower (diploied) 1	29.926
	CNS0095599	Silvery flower (diploied) 2	22.654
	CNS0095600	Silvery flower (diploied) 3	32.327
	CNS0095601	Golden flower (diploid) 1	19.582
	CNS0095602	Golden flower (diploid) 2	33.142
	CNS0095603	Golden flower (diploid) 3	31.513
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.252
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.772
	CNS0095606	Slightly white alabastrum(tetraploid) 3	81.413
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.878
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.966
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.745
	CNS0095610	Silvery flower (tetraploid) 1	31.643
	CNS0095611	Silvery flower (tetraploid) 2	33.098
	CNS0095612	Silvery flower (tetraploid) 3	22.149
	CNS0095613	Golden flower (tetraploid) 1	11.307
	CNS0095614	Golden flower (tetraploid) 2	23.782
	CNS0095615	Golden flower (tetraploid) 3	14.165
CRA001975	CRR073297	Stem 1	64.470
	CRR073298	Stem 2	57.927
	CRR073299	Stem 3	49.531
	CRR073300	Leaf 1	83.869
	CRR073301	Leaf 2	68.160
	CRR073302	Leaf 3	66.124
	CRR073303	Juvenile bud 1	67.482
	CRR073304	Juvenile bud 2	55.581
	CRR073305	Juvenile bud 3	66.288
	CRR073306	Third green 1	16.416
	CRR073307	Third green 2	18.891
	CRR073308	Third green 3	21.767
	CRR073309	Second white 1	22.510
	CRR073310	Second white 2	14.520
	CRR073311	Second white 3	13.187
	CRR073312	Silver flowering 1	8.322
	CRR073313	Silver flowering 2	6.647
	CRR073314	Silver flowering 3	4.696
	CRR073315	Gold flowering 1	47.600
	CRR073316	Gold flowering 2	71.689
	CRR073317	Gold flowering 3	47.464
	CRR073318	Tawny withering 1	54.935
	CRR073319	Tawny withering 2	45.485
	CRR073320	Tawny withering 3	58.456