Gene detail

Detail information of GWHGAAZE028080

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP16592.1	9.5729E-176	unnamed protein product [Coffea canephora]
COG	YP_003639563.1	0.000000003	serine/threonine protein kinase
Swissprot	tr\|Q8GXZ3\|Y5102_ARATH	1E-80	Serine/threonine-protein kinase At5g01020
trEMBL	tr\|A0A068V7R2\|A0A068V7R2_COFCA	4E-176	Coffea canephora DH200=94 genomic scaffold, scaffold_133 {ECO:0000313\|EMBL:CDP16592.1}
TAIR10	AT1G61590.1	3E-116	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	37924259	37927982	-
GWHAAZE00000008	mRNA	37924259	37927982	-
GWHAAZE00000008	exon	37927568	37927982	-
GWHAAZE00000008	exon	37925437	37925573	-
GWHAAZE00000008	exon	37925207	37925320	-
GWHAAZE00000008	exon	37924259	37924609	-
GWHAAZE00000008	CDS	37927568	37927982	-
GWHAAZE00000008	CDS	37925437	37925573	-
GWHAAZE00000008	CDS	37925207	37925320	-
GWHAAZE00000008	CDS	37924259	37924609	-

Transcript Sequence
>GWHTAAZE028114 ATGAAAGACTCAAACTCAAACTCCAAGCCATGGAGGCCCTTCACAGCCAACTGTTGCTCGGCCGAGGACCACAGCATCTTCGGCAACCTTAGCCGTTGCCGGACTTCCCGGTCCGACTTCTCCAAGGAGGTAGCTCCACTCCCCTCCTTTCGCCGGATCTCGTTCTCTGATCTCAGCCGTTCATCTTCCATGCGCTTAAACGAGGATCTCGCCCAGTCTTTTGGGTCGGAATTGTTCGATTTTCAATTGAGCGAATTGAGGAGCATTACGCAGGGTTTTTCGAGCAATTACTTGCTTGGGGAAGGTGGGTTTGGGACAGTGCATAAAGGGTATGTTGATGAGAATTTAAGGCAAGGGTTGAAGGCTCAAGCTGTTGCTGTTAAGCTTCTTGATATTGAAGGGTTGCAAGGGCATCGGATCTCAACTTCTTTACCGTGGGGTACTAGATTGAAGATTGCGACTGGTGCTGCCAAAGGCCTCGCTTTCTTGCACGGTGCCGAAAAGCCTGTGATATATCGCGATTTCAAGACATCGAATATCTTGCTAGATTCTGATTTTAATGCAAAGTTGTCTGATTTTGGACTTGCAACAATGGGGCCTGAAGGATCAAACACCCATGTCACTACTCGAGTTATGGGCACCTATGGCTATGCTGCCCCTGAATATAGCGACCAAAACCTTGTCGATTGGGCCAAGCCTTACTTGACTAGTAGCCGAAGGTTGCGCTGCATCATGGACAATAGACTTGCTGGCCAATACTCCGTCAAAGGATCAAAGGAAATGGCGCTTTTGGCACTCCAGTGCGTCAGTTTGAACCCGAAAGATAGGCCTAAAATGCCAGCGATTATCGAAACACTTGAAGGCCTTCAACAGCTCAGGGACATGGCAGTCACTCTAGGGTATTGGCCGGTGTCACCAAAAACCGGTAGAAATGCCGTTTCTACCATTAGAGGGAGGAGAGAAAATGGTGTGATTTACTGGAAACAATCCCCTCTTGCCGTTAGCTCGAAAACCTAA

Network for GWHGAAZE028080

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0013	Protein Kinases RLK-Pelle_RLCK-VIIa-2 family Protein Kinases RLK-Pelle_RLCK-VIIa-2 Transcription factor NAC family Transcription factor NAC map02024 Quorum sensing map00040 Pentose and glucuronate interconversions

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	151	223	3.30E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.615
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.129
	SRR3591708	Shoot apex	0.354
	SRR3591709	Stem	6.005
	SRR3591710	White floral bud	6.607
	SRR3591711	White flower	0.024
	SRR3591712	Green floral bud	20.390
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	6.373
	SRR8316896	Juvenile bud stage	7.912
	SRR8316897	Juvenile bud stage	2.967
	SRR8316894	Third green stage	1.737
	SRR8316900	Third green stage	5.821
	SRR8316901	Third green stage	2.966
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.001
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.001
	SRR8316908	Gold flowering stage	0.001
SRP132670	SRR6706286	Control	20.453
	SRR6706287	Light intensity 50%	24.187
	SRR6706288	Light intensity 20%	28.273
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.139
	CNS0095593	Slightly white alabastrum(diploid) 2	1.233
	CNS0095594	Slightly white alabastrum(diploid) 3	4.582
	CNS0095595	Whole white alabastrum(diploid) 2	0.641
	CNS0095596	Whole white alabastrum(diploid) 3	0.861
	CNS0095597	Whole white alabastrum(diploid) 4	0.671
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.002
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.010
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.478
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.825
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.381
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.273
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.868
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.002
	CNS0095612	Silvery flower (tetraploid) 3	0.082
	CNS0095613	Golden flower (tetraploid) 1	0.022
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.013
CRA001975	CRR073297	Stem 1	17.298
	CRR073298	Stem 2	19.041
	CRR073299	Stem 3	32.219
	CRR073300	Leaf 1	4.309
	CRR073301	Leaf 2	2.695
	CRR073302	Leaf 3	6.629
	CRR073303	Juvenile bud 1	0.199
	CRR073304	Juvenile bud 2	2.113
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.045
	CRR073307	Third green 2	0.008
	CRR073308	Third green 3	0.051
	CRR073309	Second white 1	0.008
	CRR073310	Second white 2	0.026
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.217
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.001
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.128
	CRR073318	Tawny withering 1	4.855
	CRR073319	Tawny withering 2	1.146
	CRR073320	Tawny withering 3	7.186