Detail information of GWHGAAZE028070


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009775024.13.74137E-41PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Nicotiana sylvestris]
Swissprottr|A8MS41|CCR4D_ARATH3E-31Carbon catabolite repressor protein 4 homolog 4
trEMBLtr|M1BA65|M1BA65_SOLTU2E-39Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400040650}
TAIR10AT1G31500.29E-27DNAse I-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene3711405637114815+
GWHAAZE00000008mRNA3711405637114815+
GWHAAZE00000008exon3711405637114065+
GWHAAZE00000008exon3711451437114815+
GWHAAZE00000008CDS3711405637114065+
GWHAAZE00000008CDS3711451437114815+
Transcript Sequence

Network for GWHGAAZE028070

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03372.24Exo_endo_phos35933.50E-06
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12603CNOT6, CCR4 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.585
SRR3591706second leaf6.009
SRR3591707mature leaf3.539
SRR3591708Shoot apex9.492
SRR3591709Stem2.473
SRR3591710White floral bud9.976
SRR3591711White flower8.556
SRR3591712Green floral bud10.514
SRR3591713Yellow flower10.631
SRP173429 SRR8316895Juvenile bud stage 10.939
SRR8316896Juvenile bud stage 14.225
SRR8316897Juvenile bud stage 9.344
SRR8316894Third green stage 5.723
SRR8316900Third green stage 21.275
SRR8316901Third green stage 18.333
SRR8316898Complete white stage 6.739
SRR8316899Complete white stage 18.319
SRR8316903Complete white stage 11.100
SRR8316902Silver flowering stage12.446
SRR8316904Silver flowering stage11.751
SRR8316905Silver flowering stage3.494
SRR8316906Gold flowering stage 15.790
SRR8316907Gold flowering stage 16.868
SRR8316908Gold flowering stage 18.743
SRP132670SRR6706286Control9.671
SRR6706287Light intensity 50%11.228
SRR6706288Light intensity 20%11.305
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.672
CNS0095593Slightly white alabastrum(diploid) 226.183
CNS0095594Slightly white alabastrum(diploid) 318.623
CNS0095595Whole white alabastrum(diploid) 218.348
CNS0095596Whole white alabastrum(diploid) 322.807
CNS0095597Whole white alabastrum(diploid) 416.999
CNS0095598Silvery flower (diploied) 19.891
CNS0095599Silvery flower (diploied) 213.253
CNS0095600Silvery flower (diploied) 311.313
CNS0095601Golden flower (diploid) 16.686
CNS0095602Golden flower (diploid) 28.408
CNS0095603Golden flower (diploid) 36.144
CNS0095604Slightly white alabastrum(tetraploid) 126.758
CNS0095605Slightly white alabastrum(tetraploid) 225.342
CNS0095606Slightly white alabastrum(tetraploid) 323.950
CNS0095607Whole white alabastrum(tetraploid) 114.938
CNS0095608Whole white alabastrum(tetraploid) 220.575
CNS0095609Whole white alabastrum(tetraploid) 319.653
CNS0095610Silvery flower (tetraploid) 18.791
CNS0095611Silvery flower (tetraploid) 26.895
CNS0095612Silvery flower (tetraploid) 312.591
CNS0095613Golden flower (tetraploid) 19.834
CNS0095614Golden flower (tetraploid) 28.677
CNS0095615Golden flower (tetraploid) 38.634
CRA001975CRR073297Stem 18.219
CRR073298Stem 26.616
CRR073299Stem 35.109
CRR073300Leaf 17.408
CRR073301Leaf 27.166
CRR073302Leaf 36.877
CRR073303Juvenile bud 19.263
CRR073304Juvenile bud 28.230
CRR073305Juvenile bud 35.368
CRR073306Third green 18.120
CRR073307Third green 28.812
CRR073308Third green 38.059
CRR073309Second white 15.197
CRR073310Second white 29.769
CRR073311Second white 37.228
CRR073312Silver flowering 17.023
CRR073313Silver flowering 22.958
CRR073314Silver flowering 35.702
CRR073315Gold flowering 14.011
CRR073316Gold flowering 25.157
CRR073317Gold flowering 32.397
CRR073318Tawny withering 13.335
CRR073319Tawny withering 25.810
CRR073320Tawny withering 33.499