Detail information of GWHGAAZE028068


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010244171.13.99312E-31PREDICTED: carbon catabolite repressor protein 4 homolog 4 [Nelumbo nucifera]
Swissprottr|A8MS41|CCR4D_ARATH1E-27Carbon catabolite repressor protein 4 homolog 4
trEMBLtr|K4CML9|K4CML9_SOLLC5E-31Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc08g075010.2.1}
TAIR10AT1G31500.11E-23DNAse I-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene3710551437106226+
GWHAAZE00000008mRNA3710551437106226+
GWHAAZE00000008exon3710551437105582+
GWHAAZE00000008exon3710603537106226+
GWHAAZE00000008CDS3710551437105582+
GWHAAZE00000008CDS3710603537106226+
Transcript Sequence

Network for GWHGAAZE028068

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12603CNOT6, CCR4 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.616
SRR3591706second leaf6.456
SRR3591707mature leaf5.951
SRR3591708Shoot apex9.029
SRR3591709Stem5.565
SRR3591710White floral bud9.106
SRR3591711White flower12.369
SRR3591712Green floral bud9.805
SRR3591713Yellow flower13.217
SRP173429 SRR8316895Juvenile bud stage 5.817
SRR8316896Juvenile bud stage 13.072
SRR8316897Juvenile bud stage 7.860
SRR8316894Third green stage 5.997
SRR8316900Third green stage 19.749
SRR8316901Third green stage 16.342
SRR8316898Complete white stage 6.422
SRR8316899Complete white stage 16.052
SRR8316903Complete white stage 10.743
SRR8316902Silver flowering stage9.547
SRR8316904Silver flowering stage9.879
SRR8316905Silver flowering stage5.248
SRR8316906Gold flowering stage 23.457
SRR8316907Gold flowering stage 19.859
SRR8316908Gold flowering stage 21.506
SRP132670SRR6706286Control27.539
SRR6706287Light intensity 50%24.930
SRR6706288Light intensity 20%27.465
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.875
CNS0095593Slightly white alabastrum(diploid) 210.738
CNS0095594Slightly white alabastrum(diploid) 35.396
CNS0095595Whole white alabastrum(diploid) 25.987
CNS0095596Whole white alabastrum(diploid) 37.419
CNS0095597Whole white alabastrum(diploid) 46.100
CNS0095598Silvery flower (diploied) 16.076
CNS0095599Silvery flower (diploied) 25.084
CNS0095600Silvery flower (diploied) 310.045
CNS0095601Golden flower (diploid) 16.041
CNS0095602Golden flower (diploid) 25.650
CNS0095603Golden flower (diploid) 36.007
CNS0095604Slightly white alabastrum(tetraploid) 113.001
CNS0095605Slightly white alabastrum(tetraploid) 29.088
CNS0095606Slightly white alabastrum(tetraploid) 312.985
CNS0095607Whole white alabastrum(tetraploid) 15.782
CNS0095608Whole white alabastrum(tetraploid) 25.128
CNS0095609Whole white alabastrum(tetraploid) 313.238
CNS0095610Silvery flower (tetraploid) 18.788
CNS0095611Silvery flower (tetraploid) 26.965
CNS0095612Silvery flower (tetraploid) 39.513
CNS0095613Golden flower (tetraploid) 13.553
CNS0095614Golden flower (tetraploid) 25.873
CNS0095615Golden flower (tetraploid) 36.186
CRA001975CRR073297Stem 18.535
CRR073298Stem 27.624
CRR073299Stem 35.150
CRR073300Leaf 18.137
CRR073301Leaf 27.294
CRR073302Leaf 37.158
CRR073303Juvenile bud 17.658
CRR073304Juvenile bud 29.708
CRR073305Juvenile bud 34.254
CRR073306Third green 19.196
CRR073307Third green 26.636
CRR073308Third green 37.844
CRR073309Second white 110.533
CRR073310Second white 216.277
CRR073311Second white 36.718
CRR073312Silver flowering 15.904
CRR073313Silver flowering 22.896
CRR073314Silver flowering 37.212
CRR073315Gold flowering 15.646
CRR073316Gold flowering 24.660
CRR073317Gold flowering 32.979
CRR073318Tawny withering 11.902
CRR073319Tawny withering 22.466
CRR073320Tawny withering 33.334