Detail information of GWHGAAZE028011


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011089620.17.5303E-99PREDICTED: 40S ribosomal protein S16 [Sesamum indicum]
COGYP_004004449.12E-3530S ribosomal protein S9
Swissprottr|O22647|RS16_FRIAG1E-9440S ribosomal protein S16
trEMBLtr|A0A068TMQ9|A0A068TMQ9_COFCA2E-97Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO97194.1}
TAIR10AT5G18380.13E-72Ribosomal protein S5 domain 2-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene3380257633803010-
GWHAAZE00000008mRNA3380257633803010-
GWHAAZE00000008exon3380257633803010-
GWHAAZE00000008CDS3380257633803010-
Transcript Sequence

Network for GWHGAAZE028011

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00380.20Ribosomal_S9121441.10E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02960RP-S16e, RPS16 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf400.625
SRR3591706second leaf219.965
SRR3591707mature leaf90.064
SRR3591708Shoot apex589.948
SRR3591709Stem190.570
SRR3591710White floral bud141.271
SRR3591711White flower181.059
SRR3591712Green floral bud361.611
SRR3591713Yellow flower104.228
SRP173429 SRR8316895Juvenile bud stage 274.024
SRR8316896Juvenile bud stage 335.562
SRR8316897Juvenile bud stage 124.580
SRR8316894Third green stage 142.843
SRR8316900Third green stage 524.060
SRR8316901Third green stage 493.498
SRR8316898Complete white stage 108.398
SRR8316899Complete white stage 485.230
SRR8316903Complete white stage 171.314
SRR8316902Silver flowering stage108.743
SRR8316904Silver flowering stage97.519
SRR8316905Silver flowering stage52.635
SRR8316906Gold flowering stage 143.112
SRR8316907Gold flowering stage 171.509
SRR8316908Gold flowering stage 149.204
SRP132670SRR6706286Control501.692
SRR6706287Light intensity 50%509.369
SRR6706288Light intensity 20%572.832
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1494.114
CNS0095593Slightly white alabastrum(diploid) 2662.160
CNS0095594Slightly white alabastrum(diploid) 3494.856
CNS0095595Whole white alabastrum(diploid) 2489.693
CNS0095596Whole white alabastrum(diploid) 3550.985
CNS0095597Whole white alabastrum(diploid) 4384.199
CNS0095598Silvery flower (diploied) 1277.927
CNS0095599Silvery flower (diploied) 2231.517
CNS0095600Silvery flower (diploied) 3225.843
CNS0095601Golden flower (diploid) 1192.127
CNS0095602Golden flower (diploid) 2200.980
CNS0095603Golden flower (diploid) 3208.402
CNS0095604Slightly white alabastrum(tetraploid) 1339.313
CNS0095605Slightly white alabastrum(tetraploid) 2340.690
CNS0095606Slightly white alabastrum(tetraploid) 3432.086
CNS0095607Whole white alabastrum(tetraploid) 1196.055
CNS0095608Whole white alabastrum(tetraploid) 2184.006
CNS0095609Whole white alabastrum(tetraploid) 3298.670
CNS0095610Silvery flower (tetraploid) 1150.958
CNS0095611Silvery flower (tetraploid) 2150.501
CNS0095612Silvery flower (tetraploid) 397.099
CNS0095613Golden flower (tetraploid) 198.074
CNS0095614Golden flower (tetraploid) 2133.872
CNS0095615Golden flower (tetraploid) 382.058
CRA001975CRR073297Stem 1533.147
CRR073298Stem 2543.878
CRR073299Stem 3704.331
CRR073300Leaf 1578.727
CRR073301Leaf 2629.039
CRR073302Leaf 31015.294
CRR073303Juvenile bud 1604.885
CRR073304Juvenile bud 2570.609
CRR073305Juvenile bud 3453.705
CRR073306Third green 1145.386
CRR073307Third green 2202.883
CRR073308Third green 3179.381
CRR073309Second white 1175.306
CRR073310Second white 2119.298
CRR073311Second white 383.867
CRR073312Silver flowering 1104.895
CRR073313Silver flowering 2159.569
CRR073314Silver flowering 397.927
CRR073315Gold flowering 1332.584
CRR073316Gold flowering 2298.920
CRR073317Gold flowering 3289.046
CRR073318Tawny withering 1605.224
CRR073319Tawny withering 2544.743
CRR073320Tawny withering 3617.653