Gene detail

Detail information of GWHGAAZE027998

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010665218.1	0	PREDICTED: cyclin-dependent kinase F-4 [Vitis vinifera]
COG	YP_003112167.1	6E-27	serine/threonine protein kinase
Swissprot	tr\|Q6Z8C8\|CDKF4_ORYSJ	0	Cyclin-dependent kinase F-4
trEMBL	tr\|D7U3Y1\|D7U3Y1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI37450.3}
TAIR10	AT4G19110.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	33586000	33592693	+
GWHAAZE00000008	mRNA	33586000	33592693	+
GWHAAZE00000008	exon	33586000	33586199	+
GWHAAZE00000008	exon	33587181	33587259	+
GWHAAZE00000008	exon	33587375	33587443	+
GWHAAZE00000008	exon	33587525	33587614	+
GWHAAZE00000008	exon	33587700	33587838	+
GWHAAZE00000008	exon	33588549	33588651	+
GWHAAZE00000008	exon	33588764	33588816	+
GWHAAZE00000008	exon	33589127	33589193	+
GWHAAZE00000008	exon	33589312	33589420	+
GWHAAZE00000008	exon	33589804	33589869	+
GWHAAZE00000008	exon	33589989	33590057	+
GWHAAZE00000008	exon	33590161	33590224	+
GWHAAZE00000008	exon	33590555	33590674	+
GWHAAZE00000008	exon	33591515	33591546	+
GWHAAZE00000008	exon	33591690	33591771	+
GWHAAZE00000008	exon	33592083	33592693	+
GWHAAZE00000008	CDS	33586000	33586199	+
GWHAAZE00000008	CDS	33587181	33587259	+
GWHAAZE00000008	CDS	33587375	33587443	+
GWHAAZE00000008	CDS	33587525	33587614	+
GWHAAZE00000008	CDS	33587700	33587838	+
GWHAAZE00000008	CDS	33588549	33588651	+
GWHAAZE00000008	CDS	33588764	33588816	+
GWHAAZE00000008	CDS	33589127	33589193	+
GWHAAZE00000008	CDS	33589312	33589420	+
GWHAAZE00000008	CDS	33589804	33589869	+
GWHAAZE00000008	CDS	33589989	33590057	+
GWHAAZE00000008	CDS	33590161	33590224	+
GWHAAZE00000008	CDS	33590555	33590674	+
GWHAAZE00000008	CDS	33591515	33591546	+
GWHAAZE00000008	CDS	33591690	33591771	+
GWHAAZE00000008	CDS	33592083	33592303	+
GWHAAZE00000008	three_prime_UTR	33592304	33592693	+

Transcript Sequence
>GWHTAAZE028032 GTTGGGTTGAACTTTGATTTGAATACCTTTATTTCCTTCAAGACATGGAGCAAGTGTGCCTATGGTCAGATCGCTACCATAAACGGGTTTCTTCATTCCAGGAAGTACTGGATTGGCGTTTTCCTATCCTTGGAGTTTTCCTTCTTGTTTCTTTTGTCAACTGCACTTAGTGGGCAGCTTTTAGATGATCAGTACAAGAGGTATAAGATAATCAAGGAAGTTGGTAATGGAACGTTTGGTAGCGTCTGGCGAGCATTGAATAAACAGACTGGCGAAATCGTTGCAATAAAAAAAATGAAGAGAAAGTATTATTCTTGGGAAGAATGCATAAATCTGAGAGAAGTCAAGTCATTGAGGAAAATGAGCCATCCAAATATTGTAAAGCTGAAGGAAGTCATTAGGGAAAATGACATCCTATACTTTGTGTTTGAATACATGGACTTCAACCTATATCAACTTATGAAAGACAGGGCGAAACTTTTCTCAGAATCTGAAATAAGAAATTGGTGCTTCCAAGTATTTCAAGGTCTTGCATACATGCATCAGCGTGGATATTTTCATCGTGACCTTAAGCCAGAAAACTTGCTTGTTACTAAAGAGAGAATAAAAATTGCTGATTTTGGCCTTGCTCGGGAAATCAGTTCACAACCCCCTTATACTGAGTATGTCTCGACTCGCTGGTATCGGGCCCCTGAAGTTTTACTCCAGTCGCCAACATATGGTTCTGCTGTTGATATGTGGGCAATGGGTGCAATCATGGCCGAATTGTTTAATCTACATCCTCTTTTTCCTGGGTCAAGTGAAGCAGATGAGATCTACAAAATTTGCAGTGTTATAGGTAGCCCTGCAGAGCTTGAATGGGCTGAAGGAATTGAACTTGCAAACACCATAAACTATCAGTTCCCACAGCTTGCTGGTGTCCATCTTTCTGTATTGATACCATCTGCGAGCAAAGATGCAATTAGCCTTATTACATCTCTTTGTTCATGGGATCCTTGCAAGAGGCCTACAGCCTTGGAGGTTCTTCAACATCCTTTCTTCCAGAGTTGCTTTTATGTTCCACCATCTCTACGCCCCAAAGCTGCTGTTGCCAGGACACCTCCACCCGCTGGGACAAGGGGAGCTTTGGTGCAAGAATGTGCTAGGAAGTATCCTGGAACTCTGTCTAATAATTCAAAGCCCATGGGCAATGTTTCGTCAGTCAAATCTCATGCAGCCTTAAGCACAGGTGTGCAACGGAAGTTGGAAATGAATAGACAGGATGCTACTAGGAATAATGATAAATCATCGAAGACCTCTCCCAAACAACCAAGATATCGTCCACCTGTGAGAGACAGTCCGACTGGGATTTACGCAGGAAAGGCACGCGGGGTTTCAGATACAGCTGAAAAGCTAGCAAACATGTCAATAGGATCAGGCAGGGTGACTCGTGTAAGGCAGCCTTTGCCTCGCGCACCTATGAAGGCAGGAGGATGGAATGGCCAATCAGACTTGTTCATGGGACGTTCTCAAGAGATGCAACAATCAGGACGCCCCCCATTTACTAGGAAAGTGGCAGGATGAATTATAAAGGCAACTGATACGGAATCTGTTGAAGGGTGCTTGGTGATATTATGGGTTAAGTTCTATATATATATATATAGTCTGCTTGCTAATAAATAAAAAGGATTTCGGGTGTTTGTGTGTGCCTGGCCAACTGTTAAAACTTCTGTAAGTTTTGGAAACGTAGGGAGATATTTGGTTTTTGAGTTTTCGAATTTAAGTCCCAACTTTTGGTGTTTAAAGTTCCAGTTTATTATGCCAGTCTTATTGATTAGTTTCATTTGGTGCTATGACGTGTATTCCGTAATACTATAATATGTTAATGGCTTATGTAAGGTTTTTTTGGTGGTTGTCATTACATGCCGTCTATGAATGGCCGGTAATTTTTTTTTTTTTTAATCACTATTCTCT

Network for GWHGAAZE027998

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	68	347	1.10E-75

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_RCK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	175.445
	SRR3591706	second leaf	97.408
	SRR3591707	mature leaf	130.100
	SRR3591708	Shoot apex	86.700
	SRR3591709	Stem	304.379
	SRR3591710	White floral bud	313.523
	SRR3591711	White flower	263.098
	SRR3591712	Green floral bud	135.814
	SRR3591713	Yellow flower	196.681
SRP173429	SRR8316895	Juvenile bud stage	47.552
	SRR8316896	Juvenile bud stage	64.142
	SRR8316897	Juvenile bud stage	23.316
	SRR8316894	Third green stage	34.109
	SRR8316900	Third green stage	92.211
	SRR8316901	Third green stage	92.521
	SRR8316898	Complete white stage	114.109
	SRR8316899	Complete white stage	146.336
	SRR8316903	Complete white stage	193.578
	SRR8316902	Silver flowering stage	166.638
	SRR8316904	Silver flowering stage	209.009
	SRR8316905	Silver flowering stage	75.384
	SRR8316906	Gold flowering stage	187.239
	SRR8316907	Gold flowering stage	233.382
	SRR8316908	Gold flowering stage	248.816
SRP132670	SRR6706286	Control	135.814
	SRR6706287	Light intensity 50%	154.835
	SRR6706288	Light intensity 20%	156.921
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	102.698
	CNS0095593	Slightly white alabastrum(diploid) 2	104.262
	CNS0095594	Slightly white alabastrum(diploid) 3	95.359
	CNS0095595	Whole white alabastrum(diploid) 2	104.509
	CNS0095596	Whole white alabastrum(diploid) 3	118.219
	CNS0095597	Whole white alabastrum(diploid) 4	113.756
	CNS0095598	Silvery flower (diploied) 1	162.833
	CNS0095599	Silvery flower (diploied) 2	126.832
	CNS0095600	Silvery flower (diploied) 3	180.883
	CNS0095601	Golden flower (diploid) 1	99.174
	CNS0095602	Golden flower (diploid) 2	128.844
	CNS0095603	Golden flower (diploid) 3	123.673
	CNS0095604	Slightly white alabastrum(tetraploid) 1	81.356
	CNS0095605	Slightly white alabastrum(tetraploid) 2	82.781
	CNS0095606	Slightly white alabastrum(tetraploid) 3	121.727
	CNS0095607	Whole white alabastrum(tetraploid) 1	92.776
	CNS0095608	Whole white alabastrum(tetraploid) 2	94.269
	CNS0095609	Whole white alabastrum(tetraploid) 3	106.602
	CNS0095610	Silvery flower (tetraploid) 1	241.134
	CNS0095611	Silvery flower (tetraploid) 2	161.839
	CNS0095612	Silvery flower (tetraploid) 3	385.074
	CNS0095613	Golden flower (tetraploid) 1	166.215
	CNS0095614	Golden flower (tetraploid) 2	158.315
	CNS0095615	Golden flower (tetraploid) 3	166.198
CRA001975	CRR073297	Stem 1	106.328
	CRR073298	Stem 2	84.394
	CRR073299	Stem 3	64.240
	CRR073300	Leaf 1	122.964
	CRR073301	Leaf 2	122.697
	CRR073302	Leaf 3	74.169
	CRR073303	Juvenile bud 1	106.160
	CRR073304	Juvenile bud 2	66.061
	CRR073305	Juvenile bud 3	129.882
	CRR073306	Third green 1	223.451
	CRR073307	Third green 2	171.718
	CRR073308	Third green 3	234.682
	CRR073309	Second white 1	65.418
	CRR073310	Second white 2	117.318
	CRR073311	Second white 3	121.193
	CRR073312	Silver flowering 1	79.813
	CRR073313	Silver flowering 2	53.992
	CRR073314	Silver flowering 3	66.825
	CRR073315	Gold flowering 1	45.550
	CRR073316	Gold flowering 2	78.491
	CRR073317	Gold flowering 3	22.636
	CRR073318	Tawny withering 1	163.126
	CRR073319	Tawny withering 2	138.673
	CRR073320	Tawny withering 3	175.684