Gene detail

Detail information of GWHGAAZE027986

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009588089.1	0	PREDICTED: LOW QUALITY PROTEIN: probable tyrosine--tRNA ligase, mitochondrial [Nicotiana tomentosiformis]
COG	YP_004652121.1	5E-159	tyrosyl-tRNA synthetase
trEMBL	tr\|K4CBX2\|K4CBX2_SOLLC	0	Tyrosine--tRNA ligase {ECO:0000256\|RuleBase:RU361234}
TAIR10	AT3G02660.1	1E-179	Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	33379447	33383601	+
GWHAAZE00000008	mRNA	33379447	33383601	+
GWHAAZE00000008	exon	33379447	33379807	+
GWHAAZE00000008	exon	33380799	33381172	+
GWHAAZE00000008	exon	33382850	33383365	+
GWHAAZE00000008	exon	33383437	33383601	+
GWHAAZE00000008	CDS	33379447	33379807	+
GWHAAZE00000008	CDS	33380799	33381172	+
GWHAAZE00000008	CDS	33382850	33383365	+
GWHAAZE00000008	CDS	33383437	33383601	+

Transcript Sequence
>GWHTAAZE028020 TGCTACTTCCTCTTCAATTATAAAAGTTTCTTCCTCCTCAATCGAACCCCTAACAGATTCTCTTCCTCCTTCCACTTCCCCTTAAACCCTTCAATAATAATCCCTTCTTCAACTACCCATTTTAAACCCCACTCCCGTCTTCTTCGCCGCCCAAATTCCTCTCTCTCCTCCTCTGCACAAACCCTATCTAATCACCCAAACCCCCAATCCCTCCGCCCCAATGTCATAAATATCCTCGAAGAAAGAGGGTTACTCGAATCCCTCACTGCCGATTCTCTCCGTTCCTCCTGCTCAGACCCTAATCTCCCTCCCATTAGGGTTTACTGCGGCTTCGACCCCACCGCCGAGAGCCTCCACCTCGGTAACCTCCTCGGGATCATCGTCCTCTCCTGGTTCCTCCGATGTGGTCATACTCCGGTGGCCCTAGTCGGCGGGGCCACAGGAAGAGTGGGAGATCCGTCTGGAAAGAGCTTGGAGAGGCCGGAGCTCAATGTGGAAACCCTAGAAAGGAACATTGCTGGGATCAGTGGGATTATCTGGCAGATTCTGGGGAAGGATGTGGTGGTGTTGAACAATTATGATTGGTGGAAGGATGTGAAGTTATTGGATTTTTTGAAAGATGTTGGGAGATTTGCTAGAGTTGGTACTATGATGGCGAAGGAGAGCGTTCGCCGGAGATTGGAGTCTTCGGAGGTGGGGTTGAGTTACACTGAATTTACCTACCAGCTTTTACAGGGCTACGATTTTATCCACCTCTTCAAGAACGAAGGGGTCACCGTCCAGATCGGTGGGAGCGACCAGTGGGGTAATATCACCGCTGGCACCGACCTAATCCGTAGAATCCTCCACTTTGACACCGCCTATGGGCTTACTTTCCCTCTCCTCCTAAAGAGTGACGGCACCAAATTTGGCAAATCGGAGGACGGTGCAATTTGGCTCTCTCCATCAATGCTATCCCCATACAAGTTCTATCAGTACTTCTTCACCGTCCCTGATGAAGATGTAGTCAAATTCCTCAAAATCCTCACTTTCTTGAGCATTGACGAAATCAACAAATTGGAGAGAGAAATGAGTAAACCTGGTTATATGCAGAACATGGCTCAGCGCCGTTTAGCAGAGGAAGTGACCCGGTTCGTTCATGGTCAAGAAGGCCTTGACGATGCACTCAAGGCCACTGAGGCTTTGAGGCCCGGAGCCGAGACCAAGTTGGATTCAAAGACCATTGAGGGATTGCTGAAGATGTGCCCTCATAGTAAGTCAGCTGCGAGGAGATTGTTGAAGCAAGGGGGGCTTTATTTGAATAACAATAGGGTTGATAGTGAAGGAAGGAAGATTGAGGAGGAGGATGTTGTGGATGGGAAGATTCTACTTTTATCAGCTGGCAAGAAGAACAAGATGGTTGTAAGAATATCTTGA

Network for GWHGAAZE027986

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00579.26	tRNA-synt_1b	104	394	3.40E-75
PF01479.26	S4	418	451	3.40E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01866	YARS, tyrS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006437	biological_process	tyrosyl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0005737	cellular_component	cytoplasm
GO:0000166	molecular_function	nucleotide binding
GO:0004831	molecular_function	tyrosine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0003723	molecular_function	RNA binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.753
	SRR3591706	second leaf	17.274
	SRR3591707	mature leaf	14.581
	SRR3591708	Shoot apex	16.445
	SRR3591709	Stem	8.451
	SRR3591710	White floral bud	7.521
	SRR3591711	White flower	11.063
	SRR3591712	Green floral bud	8.799
	SRR3591713	Yellow flower	6.771
SRP173429	SRR8316895	Juvenile bud stage	9.928
	SRR8316896	Juvenile bud stage	11.031
	SRR8316897	Juvenile bud stage	4.748
	SRR8316894	Third green stage	6.070
	SRR8316900	Third green stage	15.153
	SRR8316901	Third green stage	13.299
	SRR8316898	Complete white stage	2.604
	SRR8316899	Complete white stage	13.658
	SRR8316903	Complete white stage	5.820
	SRR8316902	Silver flowering stage	3.892
	SRR8316904	Silver flowering stage	6.374
	SRR8316905	Silver flowering stage	3.528
	SRR8316906	Gold flowering stage	9.888
	SRR8316907	Gold flowering stage	8.391
	SRR8316908	Gold flowering stage	8.655
SRP132670	SRR6706286	Control	21.860
	SRR6706287	Light intensity 50%	20.094
	SRR6706288	Light intensity 20%	20.740
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.919
	CNS0095593	Slightly white alabastrum(diploid) 2	6.482
	CNS0095594	Slightly white alabastrum(diploid) 3	6.791
	CNS0095595	Whole white alabastrum(diploid) 2	6.885
	CNS0095596	Whole white alabastrum(diploid) 3	6.862
	CNS0095597	Whole white alabastrum(diploid) 4	4.652
	CNS0095598	Silvery flower (diploied) 1	12.395
	CNS0095599	Silvery flower (diploied) 2	9.579
	CNS0095600	Silvery flower (diploied) 3	9.524
	CNS0095601	Golden flower (diploid) 1	7.365
	CNS0095602	Golden flower (diploid) 2	12.049
	CNS0095603	Golden flower (diploid) 3	10.411
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.390
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.404
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.024
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.573
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.889
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.155
	CNS0095610	Silvery flower (tetraploid) 1	17.792
	CNS0095611	Silvery flower (tetraploid) 2	20.393
	CNS0095612	Silvery flower (tetraploid) 3	14.434
	CNS0095613	Golden flower (tetraploid) 1	9.383
	CNS0095614	Golden flower (tetraploid) 2	13.557
	CNS0095615	Golden flower (tetraploid) 3	12.491
CRA001975	CRR073297	Stem 1	23.171
	CRR073298	Stem 2	21.889
	CRR073299	Stem 3	25.016
	CRR073300	Leaf 1	18.808
	CRR073301	Leaf 2	17.342
	CRR073302	Leaf 3	15.065
	CRR073303	Juvenile bud 1	13.822
	CRR073304	Juvenile bud 2	11.589
	CRR073305	Juvenile bud 3	17.025
	CRR073306	Third green 1	3.576
	CRR073307	Third green 2	1.326
	CRR073308	Third green 3	2.030
	CRR073309	Second white 1	5.941
	CRR073310	Second white 2	4.897
	CRR073311	Second white 3	5.911
	CRR073312	Silver flowering 1	3.628
	CRR073313	Silver flowering 2	2.432
	CRR073314	Silver flowering 3	2.911
	CRR073315	Gold flowering 1	29.515
	CRR073316	Gold flowering 2	41.723
	CRR073317	Gold flowering 3	31.878
	CRR073318	Tawny withering 1	12.400
	CRR073319	Tawny withering 2	7.742
	CRR073320	Tawny withering 3	13.568