Gene detail

Detail information of GWHGAAZE027946

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008238155.1	0	PREDICTED: transcription factor HBP-1a [Prunus mume]
Swissprot	tr\|P23922\|HBP1A_WHEAT	2E-70	Transcription factor HBP-1a
trEMBL	tr\|M5WAR1\|M5WAR1_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ10401.1}
TAIR10	AT2G35530.1	3E-119	basic region/leucine zipper transcription factor 16

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	32251850	32263033	+
GWHAAZE00000008	mRNA	32251850	32263033	+
GWHAAZE00000008	exon	32251850	32251954	+
GWHAAZE00000008	exon	32252048	32252122	+
GWHAAZE00000008	exon	32257193	32257282	+
GWHAAZE00000008	exon	32257371	32257430	+
GWHAAZE00000008	exon	32257580	32257752	+
GWHAAZE00000008	exon	32258741	32258798	+
GWHAAZE00000008	exon	32259652	32259694	+
GWHAAZE00000008	exon	32260246	32260520	+
GWHAAZE00000008	exon	32261667	32261744	+
GWHAAZE00000008	exon	32261843	32261968	+
GWHAAZE00000008	exon	32262956	32263033	+
GWHAAZE00000008	CDS	32251850	32251954	+
GWHAAZE00000008	CDS	32252048	32252122	+
GWHAAZE00000008	CDS	32257193	32257282	+
GWHAAZE00000008	CDS	32257371	32257430	+
GWHAAZE00000008	CDS	32257580	32257752	+
GWHAAZE00000008	CDS	32258741	32258798	+
GWHAAZE00000008	CDS	32259652	32259694	+
GWHAAZE00000008	CDS	32260246	32260520	+
GWHAAZE00000008	CDS	32261667	32261744	+
GWHAAZE00000008	CDS	32261843	32261968	+
GWHAAZE00000008	CDS	32262956	32263033	+

Transcript Sequence
>GWHTAAZE027980 TGTATGGCGGTATTTCTTATTTGTTTTGTTGCTTTTGGCATTGTTCAGGAACAGACTTCAGCTACAAGTACCGGCACTGTTAATCCAGAGTGGTCTGGTTTTCAGGCATATTCTCCTATGCCTCCACATGGGTTCATGGCCTCAAGTCCTCAAGCTCACCCTTATATGTGGGGAGTTCAGCATATGATGCCACCCTATGGCACTCCACCACACCCATATGTTGCTATGTATCCCCCCGGTGGAATATACGCTCATCCATCTATGCCTCCGGGCTCATATCCCTTTAGTCCCTTTGCAATGCCTTCACCAAATGGTGTTGCTGAAGCATCTGGTAATAATACTCCTGGAAACTTGGAGGCAGATGGTAAGTCACCCGAGGGGAAGGAAAAACTGCCCATAAAAAGATCTAAGGGTAGTTTGGGCAGTTTAAATATGATTACAGGCAAGAACATCGAAGCCGGTAAAACATCAGGAGCATCTGCTAATGGAGGCTATTCCAAAAGTGCTGAGAGCGGAAGTGAAGGTTCTAGTGAAGAAGGAAGTGAGGCAGATTCTCAAAATGACTCGCAAATGAAGTCAGGAAGTAGGCAAGATTCTCTAGAAGCCGATGCATCACAGAACGAGAATGCGGCAAATGGTTCTCAAAATGGAGGACCTAATAATGCCTTGAACCAAACGATGGCCATTGTGCCAGTGTCTACTACAGCTGGTGGGGTCCCAGGTCCCACTACTAACTTGAATATCGGTATGGACTATTGGGGTGGTGCAACCCCTTCCCCTATTTCCACTATTCGCGGTAAGTTACCTTCCACTCAAGTTTCAGGAGGAATCGTCAATGCTGGATCTCGGGATGGCATGCAATCACAGCTCTGGCTGCAGGATGAAAGGGAGCTTAAAAGACAGAGACGAAAGCAATCTAACAGGGAATCGGCTCGCAGATCCAGGCTTCGCAAGCAGGCAGAATGTGATGAGCTAGCCCAACGTGCCGAAGTATTAAAAGAAGAAAATGCGACTCTGAGAGCGGAAGTGAGTCGAATCAGGAGCGACTATGAGCAGCTCCTTGCCCAGAATGCTTCCCTTAAGGAAAGACTAGGTGAAGCTCCCGGGCAAGAAGGCCAGGGCAATGGAACTCAAACAGAAGCAGTGCAGAGTGATCAATGA

Network for GWHGAAZE027946

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07777.12	MFMR	18	89	4.40E-27
PF16596.6	MFMR_assoc	129	260	1.70E-47
PF00170.22	bZIP_1	295	357	2.30E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.043
	SRR3591706	second leaf	27.201
	SRR3591707	mature leaf	27.564
	SRR3591708	Shoot apex	45.902
	SRR3591709	Stem	35.822
	SRR3591710	White floral bud	36.974
	SRR3591711	White flower	34.998
	SRR3591712	Green floral bud	33.011
	SRR3591713	Yellow flower	35.042
SRP173429	SRR8316895	Juvenile bud stage	23.941
	SRR8316896	Juvenile bud stage	32.377
	SRR8316897	Juvenile bud stage	12.644
	SRR8316894	Third green stage	13.782
	SRR8316900	Third green stage	29.716
	SRR8316901	Third green stage	33.917
	SRR8316898	Complete white stage	11.267
	SRR8316899	Complete white stage	46.409
	SRR8316903	Complete white stage	19.952
	SRR8316902	Silver flowering stage	14.718
	SRR8316904	Silver flowering stage	16.257
	SRR8316905	Silver flowering stage	9.016
	SRR8316906	Gold flowering stage	36.421
	SRR8316907	Gold flowering stage	37.790
	SRR8316908	Gold flowering stage	33.775
SRP132670	SRR6706286	Control	36.995
	SRR6706287	Light intensity 50%	35.921
	SRR6706288	Light intensity 20%	37.687
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.390
	CNS0095593	Slightly white alabastrum(diploid) 2	24.840
	CNS0095594	Slightly white alabastrum(diploid) 3	21.616
	CNS0095595	Whole white alabastrum(diploid) 2	26.521
	CNS0095596	Whole white alabastrum(diploid) 3	23.853
	CNS0095597	Whole white alabastrum(diploid) 4	25.219
	CNS0095598	Silvery flower (diploied) 1	32.671
	CNS0095599	Silvery flower (diploied) 2	23.948
	CNS0095600	Silvery flower (diploied) 3	33.022
	CNS0095601	Golden flower (diploid) 1	32.983
	CNS0095602	Golden flower (diploid) 2	37.736
	CNS0095603	Golden flower (diploid) 3	38.500
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.819
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.838
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.596
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.790
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.532
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.374
	CNS0095610	Silvery flower (tetraploid) 1	33.843
	CNS0095611	Silvery flower (tetraploid) 2	34.579
	CNS0095612	Silvery flower (tetraploid) 3	37.453
	CNS0095613	Golden flower (tetraploid) 1	25.279
	CNS0095614	Golden flower (tetraploid) 2	31.888
	CNS0095615	Golden flower (tetraploid) 3	31.599
CRA001975	CRR073297	Stem 1	51.006
	CRR073298	Stem 2	48.257
	CRR073299	Stem 3	47.265
	CRR073300	Leaf 1	50.721
	CRR073301	Leaf 2	50.091
	CRR073302	Leaf 3	36.205
	CRR073303	Juvenile bud 1	38.386
	CRR073304	Juvenile bud 2	27.571
	CRR073305	Juvenile bud 3	48.251
	CRR073306	Third green 1	24.353
	CRR073307	Third green 2	20.478
	CRR073308	Third green 3	22.388
	CRR073309	Second white 1	25.497
	CRR073310	Second white 2	23.357
	CRR073311	Second white 3	24.744
	CRR073312	Silver flowering 1	25.444
	CRR073313	Silver flowering 2	35.070
	CRR073314	Silver flowering 3	29.643
	CRR073315	Gold flowering 1	18.034
	CRR073316	Gold flowering 2	26.023
	CRR073317	Gold flowering 3	25.273
	CRR073318	Tawny withering 1	34.357
	CRR073319	Tawny withering 2	34.747
	CRR073320	Tawny withering 3	34.194