Detail information of GWHGAAZE027941


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010262523.10PREDICTED: protein IWS1 homolog [Nelumbo nucifera]
trEMBLtr|M5WBN4|M5WBN4_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ11167.1}
TAIR10AT1G32130.15E-111Transcription elongation factor (TFIIS) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene3217072932178001-
GWHAAZE00000008mRNA3217072932178001-
GWHAAZE00000008exon3217072932170797-
GWHAAZE00000008exon3217186832172021-
GWHAAZE00000008exon3217262332172688-
GWHAAZE00000008exon3217305632173147-
GWHAAZE00000008exon3217394232174019-
GWHAAZE00000008exon3217414032174202-
GWHAAZE00000008exon3217435232174481-
GWHAAZE00000008exon3217517332175393-
GWHAAZE00000008exon3217613232176245-
GWHAAZE00000008exon3217746932177850-
GWHAAZE00000008exon3217798232178001-
GWHAAZE00000008CDS3217798232178001-
GWHAAZE00000008CDS3217746932177850-
GWHAAZE00000008CDS3217613232176245-
GWHAAZE00000008CDS3217517332175393-
GWHAAZE00000008CDS3217435232174481-
GWHAAZE00000008CDS3217414032174202-
GWHAAZE00000008CDS3217394232174019-
GWHAAZE00000008CDS3217305632173147-
GWHAAZE00000008CDS3217262332172688-
GWHAAZE00000008CDS3217186832172021-
GWHAAZE00000008CDS3217072932170797-
Transcript Sequence

Network for GWHGAAZE027941

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08711.12Med262863404.50E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyIWS1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.034
SRR3591706second leaf0.034
SRR3591707mature leaf1.000
SRR3591708Shoot apex0.435
SRR3591709Stem0.174
SRR3591710White floral bud5.188
SRR3591711White flower1.065
SRR3591712Green floral bud4.181
SRR3591713Yellow flower0.113
SRP173429 SRR8316895Juvenile bud stage 4.809
SRR8316896Juvenile bud stage 10.518
SRR8316897Juvenile bud stage 5.300
SRR8316894Third green stage 2.987
SRR8316900Third green stage 3.547
SRR8316901Third green stage 5.702
SRR8316898Complete white stage 0.028
SRR8316899Complete white stage 0.017
SRR8316903Complete white stage 0.018
SRR8316902Silver flowering stage0.002
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.012
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control2.127
SRR6706287Light intensity 50%2.045
SRR6706288Light intensity 20%2.042
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.728
CNS0095593Slightly white alabastrum(diploid) 21.452
CNS0095594Slightly white alabastrum(diploid) 35.176
CNS0095595Whole white alabastrum(diploid) 23.438
CNS0095596Whole white alabastrum(diploid) 33.642
CNS0095597Whole white alabastrum(diploid) 43.289
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.057
CNS0095601Golden flower (diploid) 10.002
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.022
CNS0095604Slightly white alabastrum(tetraploid) 112.724
CNS0095605Slightly white alabastrum(tetraploid) 210.623
CNS0095606Slightly white alabastrum(tetraploid) 30.121
CNS0095607Whole white alabastrum(tetraploid) 112.434
CNS0095608Whole white alabastrum(tetraploid) 212.701
CNS0095609Whole white alabastrum(tetraploid) 37.094
CNS0095610Silvery flower (tetraploid) 10.053
CNS0095611Silvery flower (tetraploid) 20.385
CNS0095612Silvery flower (tetraploid) 30.504
CNS0095613Golden flower (tetraploid) 10.160
CNS0095614Golden flower (tetraploid) 20.072
CNS0095615Golden flower (tetraploid) 30.179
CRA001975CRR073297Stem 13.309
CRR073298Stem 23.915
CRR073299Stem 32.205
CRR073300Leaf 11.986
CRR073301Leaf 21.688
CRR073302Leaf 32.057
CRR073303Juvenile bud 10.698
CRR073304Juvenile bud 20.379
CRR073305Juvenile bud 30.057
CRR073306Third green 10.199
CRR073307Third green 20.057
CRR073308Third green 30.070
CRR073309Second white 10.002
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.273
CRR073313Silver flowering 20.058
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.225
CRR073319Tawny withering 20.253
CRR073320Tawny withering 30.060