Gene detail

Detail information of GWHGAAZE027928

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFO84070.1	0	alpha-amylase [Actinidia chinensis]
COG	YP_003951996.1	3E-86	alpha-amylase
Swissprot	tr\|P17859\|AMYA_VIGMU	0	Alpha-amylase (Precursor)
trEMBL	tr\|S4SLG7\|S4SLG7_ACTCH	0	Alpha-amylase {ECO:0000256\|RuleBase:RU361134}
TAIR10	AT4G25000.1	6E-139	alpha-amylase-like

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	32007221	32008427	+
GWHAAZE00000008	mRNA	32007221	32008427	+
GWHAAZE00000008	exon	32007221	32008075	+
GWHAAZE00000008	exon	32008176	32008427	+
GWHAAZE00000008	CDS	32007221	32008075	+
GWHAAZE00000008	CDS	32008176	32008427	+

Transcript Sequence
>GWHTAAZE027962 ATGTATGTTTCATCTGAAATCTCTCAACCATGTTCTTTATCCCCTCCTTTTGCAGGATATTTGCCAGGAAGGTTATATGATCTCAATTCAAAATATGGGAATGAAGCCGAATTAAAAGCTTTAATTAATGCCTTCCGCAAGAAAGGTGTAAAATGCATAGCTGACATAGAAATAAACCACAGAACTGCAGAGAAACAAGATAGTAGAGGGATATGGTGCATATTTGAAGGAGGAACAGCTGATGACCGTCTAGATTGGGGACCATCCCTCATTTGCAAAGACAATAAGAATTACTCCAATGGCCTAGGAAACCTTGATACTGGAACCGACTTTCCGTTTGCTCCCGATATTGACCATCTTAACCCTAGGGTGCAAAGAGAGTTATCCGATTGGATGAACTGGCTAAAGACTGAAATTGGATTTGTCGGGTGGCGATTTGACTTTGCTGCGGGCTACTCTCCTAGTATCACTAAGGTCTATATGCGAAAAACTTCCCCCGATTTTGCAGTCGGGGAAATCTGGAATTCACTTTCATATGAGCAAAATGGAAAGCCAGCATATAACCAGGACCAACATCGTAATGAGTTAGCTCAGTGGGTCAAAAATAGTGGTGGAGTTGTGACCGCGTTTGATTTCACAACCAAGGGAATTCTTCAGGCTGCGATGAACGGAGAATTGTGGAGAATGAAGGACTCCAACGGAAATCCTCCGGGGATGATTGCGATTTTACCGGGAAATGCTATCACCTTTATTGACAATCACGATACCTATTCGCAAAATTTATGGCCATTTCCATCAGAGAAAGTCCTTCAAGGATATGTCTATATTCTCACTCATCCGGGGGTACCATCACTGTTCTATGATCACTTCTTTGAATGGGGACTGAAGGATGAAATTATCAAATTGATTAAAATCAGGGCAAGGAATAGGATCAATGCAACGAGCAAAGTGAAAATCATGGTAGCTAATTCAGATTTGTACGTCGCAATGATCGATGACAAAGTTATTGCAAAGATTGGGCCAAAGTATGATGTTGGAAATATTATTCCACCAAATTTTCAAATTGCTTCCTCTGGGTTAGACTATTGTGTGTGGGAAAAAAAGTGA

Network for GWHGAAZE027928

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00128.25	Alpha-amylase	19	168	1.70E-08
PF07821.13	Alpha-amyl_C2	308	366	5.60E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01176	AMY, amyA, malS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Pancreatic secretion	map04972
		Carbohydrate digestion and absorption	map04973

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004556	molecular_function	alpha-amylase activity
GO:0005509	molecular_function	calcium ion binding
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.793
	SRR3591706	second leaf	0.070
	SRR3591707	mature leaf	0.076
	SRR3591708	Shoot apex	0.238
	SRR3591709	Stem	2.064
	SRR3591710	White floral bud	0.636
	SRR3591711	White flower	1.323
	SRR3591712	Green floral bud	0.225
	SRR3591713	Yellow flower	2.251
SRP173429	SRR8316895	Juvenile bud stage	0.039
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.019
	SRR8316901	Third green stage	0.004
	SRR8316898	Complete white stage	0.052
	SRR8316899	Complete white stage	0.065
	SRR8316903	Complete white stage	0.058
	SRR8316902	Silver flowering stage	0.127
	SRR8316904	Silver flowering stage	0.156
	SRR8316905	Silver flowering stage	0.103
	SRR8316906	Gold flowering stage	0.202
	SRR8316907	Gold flowering stage	0.332
	SRR8316908	Gold flowering stage	0.221
SRP132670	SRR6706286	Control	0.043
	SRR6706287	Light intensity 50%	0.045
	SRR6706288	Light intensity 20%	0.026
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.033
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.251
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.030
	CNS0095598	Silvery flower (diploied) 1	0.099
	CNS0095599	Silvery flower (diploied) 2	0.121
	CNS0095600	Silvery flower (diploied) 3	0.339
	CNS0095601	Golden flower (diploid) 1	0.162
	CNS0095602	Golden flower (diploid) 2	0.487
	CNS0095603	Golden flower (diploid) 3	0.452
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.111
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.124
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.058
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.073
	CNS0095610	Silvery flower (tetraploid) 1	0.562
	CNS0095611	Silvery flower (tetraploid) 2	0.397
	CNS0095612	Silvery flower (tetraploid) 3	0.187
	CNS0095613	Golden flower (tetraploid) 1	0.328
	CNS0095614	Golden flower (tetraploid) 2	0.325
	CNS0095615	Golden flower (tetraploid) 3	0.159
CRA001975	CRR073297	Stem 1	0.008
	CRR073298	Stem 2	0.070
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.023
	CRR073301	Leaf 2	0.078
	CRR073302	Leaf 3	0.043
	CRR073303	Juvenile bud 1	0.039
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.069
	CRR073306	Third green 1	0.328
	CRR073307	Third green 2	0.353
	CRR073308	Third green 3	0.157
	CRR073309	Second white 1	0.066
	CRR073310	Second white 2	0.063
	CRR073311	Second white 3	0.153
	CRR073312	Silver flowering 1	0.432
	CRR073313	Silver flowering 2	0.418
	CRR073314	Silver flowering 3	0.300
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.021
	CRR073317	Gold flowering 3	0.029
	CRR073318	Tawny withering 1	1.050
	CRR073319	Tawny withering 2	1.149
	CRR073320	Tawny withering 3	1.911