Gene detail

Detail information of GWHGAAZE027927

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFO84070.1	0	alpha-amylase [Actinidia chinensis]
COG	YP_003951996.1	2E-100	alpha-amylase
Swissprot	tr\|P17859\|AMYA_VIGMU	0	Alpha-amylase (Precursor)
trEMBL	tr\|S4SLG7\|S4SLG7_ACTCH	0	Alpha-amylase {ECO:0000256\|RuleBase:RU361134}
TAIR10	AT4G25000.1	7E-161	alpha-amylase-like

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	31978527	31980068	+
GWHAAZE00000008	mRNA	31978527	31980068	+
GWHAAZE00000008	exon	31978527	31978659	+
GWHAAZE00000008	exon	31978915	31979714	+
GWHAAZE00000008	exon	31979817	31980068	+
GWHAAZE00000008	CDS	31978527	31978659	+
GWHAAZE00000008	CDS	31978915	31979714	+
GWHAAZE00000008	CDS	31979817	31980068	+

Transcript Sequence
>GWHTAAZE027961 GGTTTTAACTGGGCATCAAATAAGAAGGAAGGAGGATGGTACAACTCACTGATGAATTCAGTCTCAGACATAGCTGCTGCTGGGGTTACCCATGTTTGGCTCCCTCCACCCTCTCAATCTGCAGCTCCCGAAGGATATTTGCCAGGAAGGTTATATGATCTCAACTCAAAATATGGGAATGAAGCCGAATTAAAAGCTTTAATTAACGCTTTCCGTAGTAAAGGTATAAAATGCATAGCTGACATAGTAATAAACCACAGAACTGCAGAGAAACAAGATAGTAGAGGGATATGGTGCATATTTGAGGGAGGAACAGCTGATGACCGTCTAGACTGGGGACCATCCCTCATTTGCAAAGACGATAAGAATTACTCCAATGGCCTAGGAAACCTTGATACTGGAACCGACTTTCCGTTTGCTCCCGATATTGACCATCTTAACCCTAGGGTGCAAAGAGAGTTATCTGATTGGATGAACTGGCTGAAGACTGAAATTGGATTTGACGGGTGGCGATTTGACTTCGCTAAGGGCTACTCTCCTAGTATCACTAAGGTCTACATGGAAAACACATCCCCGGATTTTGCAGTCGGGGAAATCTGGAATTCACTATTGTATGAGCAAGATGAAAAACCGGCATATAACCAGGACCAACATCGTAATGAGTTGGCTCAGTGGGTCAAAAATAGCGGTGGGGTTGTGACCGCTATTGATTTCACAACCAAGGGAATTCTTCAGGCTGCCATGAAAGGAGAATTGGGGAGAATGAAAGACTCGAATAGAAATCCTCCAGGGATGATTGGGATTTTACCGGGAAATGCTGTCACCTTTATTGACAATCACGATACCTATTCGCAAAATTTGTGGCCATTTCCATCAGAAAAAGTCCTTCAAGGATATGTCTATATTCTCACTCATCCGGGGGTACCATCATTGTTTTATGATCACTTCTTTAAATGGGGACTGAAGGATGAAATTATCAAATTGACTTCGATTAGGGCAAGGAATGGGATCAGTGCAACAAGCAAAGTGCAAATTATGGCAGCTGATTCGGATTTGTATGTCGCAATGATCGATGACAAAGTTATTGCAAAGATTGGGCCAAAGTATGATGTTGGAAATATTATTCCACCAAATTTTCAAATTGCTACCTCTGGGTTAGACTATGCTGTGTGGGAAAAAAAGTGA

Network for GWHGAAZE027927

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00128.25	Alpha-amylase	26	215	4.90E-16
PF07821.13	Alpha-amyl_C2	334	392	3.90E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01176	AMY, amyA, malS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Pancreatic secretion	map04972
		Carbohydrate digestion and absorption	map04973

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004556	molecular_function	alpha-amylase activity
GO:0005509	molecular_function	calcium ion binding
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.593
	SRR3591706	second leaf	0.550
	SRR3591707	mature leaf	0.530
	SRR3591708	Shoot apex	0.311
	SRR3591709	Stem	2.556
	SRR3591710	White floral bud	1.416
	SRR3591711	White flower	3.099
	SRR3591712	Green floral bud	0.360
	SRR3591713	Yellow flower	7.682
SRP173429	SRR8316895	Juvenile bud stage	0.132
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.057
	SRR8316894	Third green stage	0.009
	SRR8316900	Third green stage	0.039
	SRR8316901	Third green stage	0.032
	SRR8316898	Complete white stage	0.417
	SRR8316899	Complete white stage	0.551
	SRR8316903	Complete white stage	0.208
	SRR8316902	Silver flowering stage	0.294
	SRR8316904	Silver flowering stage	0.630
	SRR8316905	Silver flowering stage	0.428
	SRR8316906	Gold flowering stage	0.401
	SRR8316907	Gold flowering stage	0.634
	SRR8316908	Gold flowering stage	0.620
SRP132670	SRR6706286	Control	0.114
	SRR6706287	Light intensity 50%	0.249
	SRR6706288	Light intensity 20%	0.205
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.046
	CNS0095593	Slightly white alabastrum(diploid) 2	0.069
	CNS0095594	Slightly white alabastrum(diploid) 3	0.035
	CNS0095595	Whole white alabastrum(diploid) 2	0.046
	CNS0095596	Whole white alabastrum(diploid) 3	0.017
	CNS0095597	Whole white alabastrum(diploid) 4	0.011
	CNS0095598	Silvery flower (diploied) 1	0.399
	CNS0095599	Silvery flower (diploied) 2	0.575
	CNS0095600	Silvery flower (diploied) 3	0.900
	CNS0095601	Golden flower (diploid) 1	0.310
	CNS0095602	Golden flower (diploid) 2	0.901
	CNS0095603	Golden flower (diploid) 3	0.888
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.236
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.022
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.338
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.076
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.407
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.077
	CNS0095610	Silvery flower (tetraploid) 1	1.879
	CNS0095611	Silvery flower (tetraploid) 2	1.860
	CNS0095612	Silvery flower (tetraploid) 3	1.439
	CNS0095613	Golden flower (tetraploid) 1	1.208
	CNS0095614	Golden flower (tetraploid) 2	1.551
	CNS0095615	Golden flower (tetraploid) 3	1.315
CRA001975	CRR073297	Stem 1	0.091
	CRR073298	Stem 2	0.107
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.040
	CRR073301	Leaf 2	0.335
	CRR073302	Leaf 3	0.064
	CRR073303	Juvenile bud 1	0.046
	CRR073304	Juvenile bud 2	0.040
	CRR073305	Juvenile bud 3	0.217
	CRR073306	Third green 1	0.719
	CRR073307	Third green 2	0.647
	CRR073308	Third green 3	0.442
	CRR073309	Second white 1	0.304
	CRR073310	Second white 2	0.333
	CRR073311	Second white 3	0.405
	CRR073312	Silver flowering 1	1.015
	CRR073313	Silver flowering 2	0.752
	CRR073314	Silver flowering 3	0.612
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.024
	CRR073317	Gold flowering 3	0.037
	CRR073318	Tawny withering 1	1.350
	CRR073319	Tawny withering 2	0.792
	CRR073320	Tawny withering 3	1.754