Detail information of GWHGAAZE027925


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAFO84070.10alpha-amylase [Actinidia chinensis]
COGYP_003951996.18E-104alpha-amylase
Swissprottr|P17859|AMYA_VIGMU0Alpha-amylase (Precursor)
trEMBLtr|S4SLG7|S4SLG7_ACTCH0Alpha-amylase {ECO:0000256|RuleBase:RU361134}
TAIR10AT4G25000.14E-162alpha-amylase-like

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene3192608931927622+
GWHAAZE00000008mRNA3192608931927622+
GWHAAZE00000008exon3192608931926221+
GWHAAZE00000008exon3192646931927268+
GWHAAZE00000008exon3192737131927622+
GWHAAZE00000008CDS3192608931926221+
GWHAAZE00000008CDS3192646931927268+
GWHAAZE00000008CDS3192737131927622+
Transcript Sequence

Network for GWHGAAZE027925

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00128.25Alpha-amylase262128.10E-17
PF07821.13Alpha-amyl_C23343925.40E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01176AMY, amyA, malS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500
Pancreatic secretionmap04972
Carbohydrate digestion and absorptionmap04973

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0003824molecular_functioncatalytic activity
GO:0004556molecular_functionalpha-amylase activity
GO:0005509molecular_functioncalcium ion binding
GO:0043169molecular_functioncation binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE027925.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30102030405060708090100110Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.042
SRR3591706second leaf6.909
SRR3591707mature leaf8.579
SRR3591708Shoot apex10.541
SRR3591709Stem33.398
SRR3591710White floral bud29.405
SRR3591711White flower58.101
SRR3591712Green floral bud4.710
SRR3591713Yellow flower80.671
SRP173429 SRR8316895Juvenile bud stage 4.321
SRR8316896Juvenile bud stage 2.016
SRR8316897Juvenile bud stage 1.435
SRR8316894Third green stage 1.487
SRR8316900Third green stage 3.783
SRR8316901Third green stage 2.336
SRR8316898Complete white stage 11.574
SRR8316899Complete white stage 12.203
SRR8316903Complete white stage 14.355
SRR8316902Silver flowering stage22.961
SRR8316904Silver flowering stage36.919
SRR8316905Silver flowering stage17.087
SRR8316906Gold flowering stage 44.723
SRR8316907Gold flowering stage 40.072
SRR8316908Gold flowering stage 39.273
SRP132670SRR6706286Control10.956
SRR6706287Light intensity 50%9.773
SRR6706288Light intensity 20%5.184
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.468
CNS0095593Slightly white alabastrum(diploid) 25.510
CNS0095594Slightly white alabastrum(diploid) 36.311
CNS0095595Whole white alabastrum(diploid) 25.388
CNS0095596Whole white alabastrum(diploid) 32.559
CNS0095597Whole white alabastrum(diploid) 45.193
CNS0095598Silvery flower (diploied) 141.457
CNS0095599Silvery flower (diploied) 226.795
CNS0095600Silvery flower (diploied) 347.107
CNS0095601Golden flower (diploid) 129.911
CNS0095602Golden flower (diploid) 252.538
CNS0095603Golden flower (diploid) 350.289
CNS0095604Slightly white alabastrum(tetraploid) 15.831
CNS0095605Slightly white alabastrum(tetraploid) 27.254
CNS0095606Slightly white alabastrum(tetraploid) 38.306
CNS0095607Whole white alabastrum(tetraploid) 18.630
CNS0095608Whole white alabastrum(tetraploid) 27.981
CNS0095609Whole white alabastrum(tetraploid) 34.556
CNS0095610Silvery flower (tetraploid) 172.569
CNS0095611Silvery flower (tetraploid) 285.473
CNS0095612Silvery flower (tetraploid) 375.445
CNS0095613Golden flower (tetraploid) 183.510
CNS0095614Golden flower (tetraploid) 295.285
CNS0095615Golden flower (tetraploid) 347.109
CRA001975CRR073297Stem 13.731
CRR073298Stem 22.468
CRR073299Stem 31.902
CRR073300Leaf 13.273
CRR073301Leaf 23.615
CRR073302Leaf 31.639
CRR073303Juvenile bud 15.523
CRR073304Juvenile bud 25.200
CRR073305Juvenile bud 36.604
CRR073306Third green 132.438
CRR073307Third green 226.281
CRR073308Third green 328.563
CRR073309Second white 129.916
CRR073310Second white 224.110
CRR073311Second white 323.214
CRR073312Silver flowering 152.930
CRR073313Silver flowering 247.468
CRR073314Silver flowering 349.357
CRR073315Gold flowering 111.918
CRR073316Gold flowering 215.432
CRR073317Gold flowering 316.295
CRR073318Tawny withering 140.292
CRR073319Tawny withering 267.030
CRR073320Tawny withering 319.053