Gene detail

Detail information of GWHGAAZE027886

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663135.1	1.2989E-113	PREDICTED: probable transcription factor KAN2 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9C616\|KAN2_ARATH	1E-61	Probable transcription factor KAN2
trEMBL	tr\|F6HT56\|F6HT56_VITVI	5E-114	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57866.1}
TAIR10	AT1G32240.1	5E-41	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	30935966	30939478	+
GWHAAZE00000008	mRNA	30935966	30939478	+
GWHAAZE00000008	exon	30935966	30936599	+
GWHAAZE00000008	exon	30936983	30937059	+
GWHAAZE00000008	exon	30939148	30939193	+
GWHAAZE00000008	exon	30939345	30939478	+
GWHAAZE00000008	CDS	30935966	30936599	+
GWHAAZE00000008	CDS	30936983	30937059	+
GWHAAZE00000008	CDS	30939148	30939193	+
GWHAAZE00000008	CDS	30939345	30939478	+

Transcript Sequence
>GWHTAAZE027920 ATGGAGTTATTCCCGGCCCAACCAGACTTATCCTTACAAATCAGCCCTCCTAACAGCAAACCCAAACCAAGTTGGAGTAGAACAGAGGAAGAAAAGAACCTAGGGTTCTGGAACTCCATCTCTTCAATGGCGAAACCCGGTTTCGACCTATCTTTATCCAACCCAAGGATATCAAACCACCCGGATCCAAACACCCCTCATTTCCACCACCATCACAACCACAACCACAACCACCACCACCACCACCACCAACAACCACAGAATTTTAATTCCAATTTTACCCTCCACCACCAAAACCAAGTGTTTCAACAACCTGCAGGAGGGCTAAGCCCAGAGCTTGGCTTCTTGAGACCCATAAGGGGAATCCCAATATACCAAAACTACCCTTCCAATTCTCATTTTCCATTAGCTCAAGAAGTTTTAAGCACACCCCTTTCTTCACCTTCTATTAATGACAATAGCAGTAGTAATCACAATAGTACCCCATTTCAGCCTCATCATCATGGGATTATGCGGTCGAGGTTTCTGTCTCGGTTTCCGGGTAAACGGAACATGAGGGCCCCACGTATGCGTTGGACTAGCACGTTACACGCGCGGTTCATCCACGCGGTCGAACTCTTGGGTGGCCATGAAAGAGCTACACCAAAGTCAGTGCTTGAGCTCATGGATGTGAAAGATCTCACCTTGGCCCATGTTAAATCTCATTTACAGATGTATAGAACTGTGAAGACAACTGATAGACCAGCAGCTTCTTCAGGCGATAATTCAGAGGATGTAATGTTTGAAATTCGAAATACAAGAAGGTCTGAATTATCATCTGAAGAGGGAAGATCAAATGTGCATCAAGATCATAAGGATTATCATGCCCTTTGGAGCAACTCTTCAAGGTAA

Network for GWHGAAZE027886

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	189	240	1.90E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.420
	SRR3591706	second leaf	9.571
	SRR3591707	mature leaf	14.518
	SRR3591708	Shoot apex	12.523
	SRR3591709	Stem	22.752
	SRR3591710	White floral bud	4.208
	SRR3591711	White flower	4.770
	SRR3591712	Green floral bud	6.987
	SRR3591713	Yellow flower	3.141
SRP173429	SRR8316895	Juvenile bud stage	6.299
	SRR8316896	Juvenile bud stage	5.575
	SRR8316897	Juvenile bud stage	2.577
	SRR8316894	Third green stage	1.805
	SRR8316900	Third green stage	4.955
	SRR8316901	Third green stage	3.394
	SRR8316898	Complete white stage	0.564
	SRR8316899	Complete white stage	4.198
	SRR8316903	Complete white stage	2.046
	SRR8316902	Silver flowering stage	1.021
	SRR8316904	Silver flowering stage	1.641
	SRR8316905	Silver flowering stage	0.722
	SRR8316906	Gold flowering stage	2.286
	SRR8316907	Gold flowering stage	1.923
	SRR8316908	Gold flowering stage	2.906
SRP132670	SRR6706286	Control	5.941
	SRR6706287	Light intensity 50%	6.012
	SRR6706288	Light intensity 20%	5.565
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.122
	CNS0095593	Slightly white alabastrum(diploid) 2	2.242
	CNS0095594	Slightly white alabastrum(diploid) 3	3.407
	CNS0095595	Whole white alabastrum(diploid) 2	2.263
	CNS0095596	Whole white alabastrum(diploid) 3	1.414
	CNS0095597	Whole white alabastrum(diploid) 4	1.572
	CNS0095598	Silvery flower (diploied) 1	5.911
	CNS0095599	Silvery flower (diploied) 2	5.019
	CNS0095600	Silvery flower (diploied) 3	3.231
	CNS0095601	Golden flower (diploid) 1	3.823
	CNS0095602	Golden flower (diploid) 2	4.406
	CNS0095603	Golden flower (diploid) 3	4.137
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.033
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.413
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.797
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.994
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.943
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.205
	CNS0095610	Silvery flower (tetraploid) 1	1.574
	CNS0095611	Silvery flower (tetraploid) 2	2.386
	CNS0095612	Silvery flower (tetraploid) 3	1.282
	CNS0095613	Golden flower (tetraploid) 1	0.840
	CNS0095614	Golden flower (tetraploid) 2	1.315
	CNS0095615	Golden flower (tetraploid) 3	1.479
CRA001975	CRR073297	Stem 1	11.277
	CRR073298	Stem 2	11.140
	CRR073299	Stem 3	10.184
	CRR073300	Leaf 1	4.546
	CRR073301	Leaf 2	4.915
	CRR073302	Leaf 3	2.549
	CRR073303	Juvenile bud 1	3.526
	CRR073304	Juvenile bud 2	2.015
	CRR073305	Juvenile bud 3	3.852
	CRR073306	Third green 1	0.973
	CRR073307	Third green 2	0.345
	CRR073308	Third green 3	1.999
	CRR073309	Second white 1	0.341
	CRR073310	Second white 2	1.292
	CRR073311	Second white 3	1.460
	CRR073312	Silver flowering 1	1.270
	CRR073313	Silver flowering 2	0.892
	CRR073314	Silver flowering 3	0.758
	CRR073315	Gold flowering 1	0.679
	CRR073316	Gold flowering 2	3.088
	CRR073317	Gold flowering 3	1.249
	CRR073318	Tawny withering 1	10.078
	CRR073319	Tawny withering 2	17.676
	CRR073320	Tawny withering 3	9.427