Gene detail

Detail information of GWHGAAZE027885

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010663114.1	PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q336N8\|JM706_ORYSJ	Lysine-specific demethylase JMJ706
trEMBL	tr\|A0A068VD79\|A0A068VD79_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_253 {ECO:0000313\|EMBL:CDP18547.1}
TAIR10	AT5G46910.1	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	30899804	30909881	+
GWHAAZE00000008	mRNA	30899804	30909881	+
GWHAAZE00000008	exon	30899804	30900206	+
GWHAAZE00000008	exon	30900912	30901068	+
GWHAAZE00000008	exon	30901152	30901371	+
GWHAAZE00000008	exon	30902489	30902568	+
GWHAAZE00000008	exon	30902975	30903252	+
GWHAAZE00000008	exon	30904190	30904585	+
GWHAAZE00000008	exon	30906714	30907129	+
GWHAAZE00000008	exon	30908106	30908333	+
GWHAAZE00000008	exon	30908997	30909881	+
GWHAAZE00000008	CDS	30899804	30900206	+
GWHAAZE00000008	CDS	30900912	30901068	+
GWHAAZE00000008	CDS	30901152	30901371	+
GWHAAZE00000008	CDS	30902489	30902568	+
GWHAAZE00000008	CDS	30902975	30903252	+
GWHAAZE00000008	CDS	30904190	30904585	+
GWHAAZE00000008	CDS	30906714	30907129	+
GWHAAZE00000008	CDS	30908106	30908333	+
GWHAAZE00000008	CDS	30908997	30909341	+
GWHAAZE00000008	three_prime_UTR	30909342	30909881	+

Transcript Sequence
>GWHTAAZE027919 ATGTGTCACTTTTTTTACCAGGTGGAAGGAAGGGTTTGTTTCTCCAGAGAGGCAACACTAGAATATCTGAAGCATAAGAGGCTTCAGCAGATGAAAACAGAAACTTTGGATGGTAAGTTGCATGTAACTAAAACGATGATGAGAAGTGGAGGAGATGCTTTAAGAGCATCTGCATCATGTGGTGGTATGAGATTACAAGGCACTATGGAGAAATTTCCTCAGTCAACTGGGGCTTCAAATGGGAAGGATGTTTTATTAAAGCACATGGTTGCTAAGTTTGACATAAATAATCTTGAATGGACTGATAAAATACCAGAGTGTCCCGTATACTGTCCAAGTAAAGAGGAGTTTGAGGATCCGTTGGTTTATCTACAAAAGATAGCTCCAGAAGCTTCAAGATATGGGATATGCAAGATTGTTTCCCCTTTGATTGCCTCTGTTCCTGCTGGATCAGTATTGATAAAAGAAAAAGCAGGTTTTAAGTTTACAACCAGAGTTCAACCGCTTCGTCTTGCTGAGTGGGATACTGATGACAAGGTCACTTTTTTCATGAGCGGAAGAAATTATACGTTTCGTGAATTCGAGAAAATGGCGAACAAAGTTTTTGCTCGTAGATATTATAGTGCTGGATGTCTTCCTGCAACTTATTTGGAAAAAGAATTTTGGAATGAAATAGCTTGTGGAAAGACAGAAAGTGTTGAATATGCTTGCGATGTTGATGGTAGTGCCTTTTCTTCTTGCCCCAATGATCAACTTGGAAAAAGCAAATGGAATCTAAAGGGAGTTACCGAACCCATGCTTTACATTGGGATGCTATTTAGTATGTTTGCTTGGCATGTGGAAGATCATTACTTGTACAGCATCAATTATCATCACTGTGGGGCTGCAAAAACCTGGTACGGAATTCCTGGTAAGGCTGCTTTGGATTTTGAAAAAGTGGTTAGAGATCATGTGTATGCCCGTGATATTTTATCAACTGATGGAGAAGATGGAGCTTTTGATGTGCTTTTGGGGAAGACAACATTGTTCCCTCCTAGTATTTTGTTAGGACACAAAGTTCCAGTCTACAAGGCAGTTCAAAAGCCTGGTGAATTCATAATAACCTTCCCTAGAGCATATCATGCCGGATTTAGTCATGGTTTTAATTGTGGCGAGGCTGTAAACTTCGCAATTGGTGATTGGTTCCCTTTAGGATCAATTGCTAGCCGTCGATATGCGCGTCTTAACAGGATGCCCCTCCTTCCTCATGAGGAACTTCTCTGCAAAGAAGCACTGCTTCTTCACACTAGTTTGGAACTTGAAAATCCAGATTATTCATTTGAAGACTCAACGGCTCACTGCAGCATTAAGGTTTCTTTTGTAAATTTGATGCGATTCCAGCACCGTGCCCACTGGTGTATAACGAAATCAGGACTGTGCAGGGGCGTTTCTGTAACTTCTCACGGAACTATTCTCTGCAGCCTTTGCAAACGTGACTGTTATTTAGCGTATCTCAACTGCAGCTGCTACTTGCATCCTCTGTGCATTCGCCACGATATTAAGTCACTCAACCTGCCCTGTGGGGCCAATCATACTCTCTTCCTACGAGAAAATATTTCAGATTTAGAGGCTGCAGCCAAGAAGTTTGAGCAAGAGTATGATATCTTACGCAAGGTTCAAAAGTACAGTACGAGTTGCGATGATATGTCTCTATTATTTAAGATGTTCCCAAGAGCTGAAGATGATGGATACATGCCTTATTGCGATATCGACTTTGAACTGAACTTGGAGATTGCCAAAGATAAGGATCGCATATATGAGTCAGCGTGCAGTCCAATCGAGTCTATGCTGTGCAGTGATGGAGATAGTTTTAGAACTAAAAATTCGGATGCTTCTCTATCGCGTGTTTCATCTGCATCAACTCTTTGTTCTTTTATGGATCCATCGGAAAGCTTTTCCATAGCTGACAATGTACACAGGCCGACTAGCTCAAGTTTAGGAAATATTGTATATAGAAACCCGTCAACAGAAGTAGTTCACACACATGAAGATTCACGGTCTTCTAAGAATGATGGATGTTTGGGCTCCCAAGACAATGACGAGTCCGATTCAGAGATATTCAGGGTTAAACGCCGTTCCTCTGCAAAAGTGGATCACGCTTATGCAAAAAATGCCATCTCTCCAACTCTTGAACATCAGGGTCTTAAGCGACTAAAGAAAATTCAACCCGACCGAAGATTTGGGTCCTTAACTTCATCATCAGATCAAGGCCATAATTTAACTCAAACTATAATGCATCCTAAGAAACCTACTCACAACGCTTCAAGGGAACGGTTAACTTGTGGAATTGCCATTCCCATTTCCATCAAGTACAGAAGGCCAGCCAACGAGGAAGCCGTGATTAAACATAGTCAACACCAATACCTCATAGATGACAAGTTCCGCCCCGAGCCGGGGACGGGACCGAGTCACCCACTGCCCTGGTCTATTGAGACCGGGCCAAAGCGGATTAAAGTCCGGGGCCCATCGGCTCCTAGGGTTTAAAGGGCCAGCTTAATGAATAGAAGATTGGCAGTGACTATGCTAATTTCTCTAATGGGGAGTGTTTCTAACAATAGGGAAAAGATTAAAAGTGATTCGTTGTTTAGCAGCAGCGGAATTTGACCCATTTTAGATTTGATGAAAGAAGGAAGTATATTCTTTTATTGTGAAGGCCTCAAATTGGGGTGATCGGCACGGTGGCAAATTTTTATGGGGTTCTCATGCCGGGGTGTTTTTCGGTCTTTGGCCGGAGAACCCTTTCTCTCTTGCAAGAAGAAAGTAGATGGTAATGTTAGGGTTAGGGTTTAGGTACTTTTTGGAATGTAAATTTGTTTATTTTTAACAAAACTGATCAATTTTTGTGAGGGAATTTGGGTATTTTCCCAATTAGGTTCTCCCATTTGATGTGAAAGTCTGCTGCTTTCCTTGCTAGGGTTCTTGATTCTTTTTAATCTTTTTTGTAGCAGGTGGCTCCTTGTGACCTTTGACCTTTTTTTTTTCTTGACTATTTGAAATAAAAATTTAGAGATCTTCCACTTCAAA

Network for GWHGAAZE027885

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02375.18	JmjN	108	140	9.60E-14
PF02373.23	JmjC	266	389	5.90E-39
PF02928.17	zf-C5HC2	486	537	3.40E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.524
	SRR3591706	second leaf	8.346
	SRR3591707	mature leaf	3.191
	SRR3591708	Shoot apex	11.060
	SRR3591709	Stem	2.969
	SRR3591710	White floral bud	2.629
	SRR3591711	White flower	0.527
	SRR3591712	Green floral bud	10.619
	SRR3591713	Yellow flower	0.097
SRP173429	SRR8316895	Juvenile bud stage	13.923
	SRR8316896	Juvenile bud stage	13.303
	SRR8316897	Juvenile bud stage	6.751
	SRR8316894	Third green stage	3.690
	SRR8316900	Third green stage	11.747
	SRR8316901	Third green stage	10.918
	SRR8316898	Complete white stage	0.050
	SRR8316899	Complete white stage	0.726
	SRR8316903	Complete white stage	0.121
	SRR8316902	Silver flowering stage	0.024
	SRR8316904	Silver flowering stage	0.022
	SRR8316905	Silver flowering stage	0.017
	SRR8316906	Gold flowering stage	0.033
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.206
SRP132670	SRR6706286	Control	2.200
	SRR6706287	Light intensity 50%	1.957
	SRR6706288	Light intensity 20%	2.002
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.966
	CNS0095593	Slightly white alabastrum(diploid) 2	8.688
	CNS0095594	Slightly white alabastrum(diploid) 3	10.966
	CNS0095595	Whole white alabastrum(diploid) 2	12.903
	CNS0095596	Whole white alabastrum(diploid) 3	15.588
	CNS0095597	Whole white alabastrum(diploid) 4	13.305
	CNS0095598	Silvery flower (diploied) 1	0.687
	CNS0095599	Silvery flower (diploied) 2	0.828
	CNS0095600	Silvery flower (diploied) 3	0.433
	CNS0095601	Golden flower (diploid) 1	0.453
	CNS0095602	Golden flower (diploid) 2	0.410
	CNS0095603	Golden flower (diploid) 3	0.376
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.931
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.301
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.306
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.132
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.503
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.975
	CNS0095610	Silvery flower (tetraploid) 1	0.063
	CNS0095611	Silvery flower (tetraploid) 2	0.101
	CNS0095612	Silvery flower (tetraploid) 3	0.268
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.032
	CNS0095615	Golden flower (tetraploid) 3	0.019
CRA001975	CRR073297	Stem 1	15.746
	CRR073298	Stem 2	8.938
	CRR073299	Stem 3	5.763
	CRR073300	Leaf 1	5.329
	CRR073301	Leaf 2	5.937
	CRR073302	Leaf 3	2.795
	CRR073303	Juvenile bud 1	1.812
	CRR073304	Juvenile bud 2	0.708
	CRR073305	Juvenile bud 3	0.821
	CRR073306	Third green 1	0.051
	CRR073307	Third green 2	0.020
	CRR073308	Third green 3	0.127
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.131
	CRR073311	Second white 3	0.030
	CRR073312	Silver flowering 1	0.031
	CRR073313	Silver flowering 2	0.094
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.616
	CRR073316	Gold flowering 2	1.998
	CRR073317	Gold flowering 3	1.157
	CRR073318	Tawny withering 1	1.870
	CRR073319	Tawny withering 2	0.985
	CRR073320	Tawny withering 3	2.309