Gene detail

Detail information of GWHGAAZE027883

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006365981.1	1.1903E-112	PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060-like [Solanum tuberosum]
Swissprot	tr\|Q6X5Y6\|WRI1_ARATH	2E-63	Ethylene-responsive transcription factor WRI1
trEMBL	tr\|K4C7R5\|K4C7R5_SOLLC	2E-112	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g066390.1.1}
TAIR10	AT5G17430.1	2E-45	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	30863613	30865121	-
GWHAAZE00000008	mRNA	30863613	30865121	-
GWHAAZE00000008	exon	30863613	30864193	-
GWHAAZE00000008	exon	30864428	30864504	-
GWHAAZE00000008	exon	30864600	30864650	-
GWHAAZE00000008	exon	30864761	30864834	-
GWHAAZE00000008	exon	30864984	30865121	-
GWHAAZE00000008	CDS	30864984	30865121	-
GWHAAZE00000008	CDS	30864761	30864834	-
GWHAAZE00000008	CDS	30864600	30864650	-
GWHAAZE00000008	CDS	30864428	30864504	-
GWHAAZE00000008	CDS	30863613	30864193	-

Transcript Sequence
>GWHTAAZE027917 ATGTATGTACTAATCGATCATTTTCTTTTGCAATGTAAAACTAAACTAGGTGCTTATGATGAAGAAGAATCTGCAGCAAGAGCGTACGACTTAGCTGCGATCAAGTACTGGGGAACATCGACCTTCACAAATTTCCCGGTATCTGATTATGAGAAAGAGGTGGAGATAATGGAGAATGTATCAAAAGAGGAATACTTGGCTTCTTTGAGAAGGAGAAGCAGTGGCTTCTCAAGAGGTGTGTCCAAGTATAGAGGAGTTGCAAGGCATCATCACAATGGTAGATGGGAAGCAAGAATAGGGAGGGTGTTTGGAAACAAGTATCTCTATTTGGGCACTTATGGTACTCAAGAGGAGGCGGCTCATGCTTATGATATGGCCGCAATCGAATACAGAGGGATGAATGCCGTAACCAACTTTGATTTGAGCACATACATAAGGTGGCTAAGATCAAGTGCAAATTCAAATCCCTCTCAAGATCCAACAACTGATTCCCAACCTATTCAAACGACTCAAGATCGCCCTAATCCGGTTGAGGACATCGGATTCTCCTTCAACCCAAACTCTTTTTCCATGAAAAAGCCGGGCAATATTTTTCCTCAGAAACAAGAACTTATTGAAAGGAAAATGCCAATTAGTCCTTCAAACAAGTCATTAACATCATCTTCATCTTCTTCACCGACTGCACTTGGTCTCCTCCTCCGGTCTTCTATGTTTAAAGAATTGGTGGAAAAGAATTCAAATTCAAATGCTAGTGACGAAGAAATGGAAGGAAATGACACAAAGAAGCACAGATCGAATCCTAGCGTTGAGGATGATGAATTTGGAGGAATATTTAATTACAGTGGGATTAGTAGCGAGTTTAAGGAAGAGAGTGGATCACCATTCTTTAAACCTTCTTTCTTTCAATTAACTAACAATTAA

Network for GWHGAAZE027883

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	81	133	1.20E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.150
	SRR8316896	Juvenile bud stage	0.127
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.096
	SRR8316901	Third green stage	0.092
	SRR8316898	Complete white stage	0.056
	SRR8316899	Complete white stage	0.142
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.072
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.328
	CNS0095593	Slightly white alabastrum(diploid) 2	0.044
	CNS0095594	Slightly white alabastrum(diploid) 3	0.328
	CNS0095595	Whole white alabastrum(diploid) 2	0.418
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.302
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.220
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.094
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.475
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.315
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.105
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.066
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.423
	CRR073298	Stem 2	0.565
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.127
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.050
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000