Gene detail

Detail information of GWHGAAZE027869

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011018520.1	0	PREDICTED: uncharacterized protein LOC105121539 [Populus euphratica]
trEMBL	tr\|M1B6Q6\|M1B6Q6_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400038360}
TAIR10	AT4G17760.1	4E-131	damaged DNA binding;exodeoxyribonuclease IIIs

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	30550565	30556632	-
GWHAAZE00000008	mRNA	30550565	30556632	-
GWHAAZE00000008	exon	30556546	30556632	-
GWHAAZE00000008	exon	30556174	30556263	-
GWHAAZE00000008	exon	30555197	30555351	-
GWHAAZE00000008	exon	30554359	30554479	-
GWHAAZE00000008	exon	30552839	30552958	-
GWHAAZE00000008	exon	30552301	30552371	-
GWHAAZE00000008	exon	30550565	30550817	-
GWHAAZE00000008	CDS	30556546	30556632	-
GWHAAZE00000008	CDS	30556174	30556263	-
GWHAAZE00000008	CDS	30555197	30555351	-
GWHAAZE00000008	CDS	30554359	30554479	-
GWHAAZE00000008	CDS	30552839	30552958	-
GWHAAZE00000008	CDS	30552301	30552371	-
GWHAAZE00000008	CDS	30550565	30550817	-

Transcript Sequence
>GWHTAAZE027903 ATGAGCTCGTCGGGGGTTGAACCAGAGTCGCCGGACCTTGTCTGTGAGCTCGACAACGTTCAAGGTGTCGTCGATGCTCTCACCTCCGATGCAGTTTTGGAGTTGTCAGAGCATGGCATAGTGTTGATTGTCGAGGATACCGGTTGTCTGCAAGCAAAAGTTTATCTAAAACGCGAGCTTTTTGTTCGTTACGAATATGGTGCTCAAGGGCGGCCTCGGTTTGGAGTGAGCTTGGGCCTTTTTGTTGATTGTCTCAACACATTTTCAGTTCCTGGACATTCGAGCACAATCGAACTCCGGTATCCGGGGCCTGACATGCAGCTTCTTCTCAAGTCTATTGATTCATTAGATGCTTGCATTTACGCGGAGATCAGAACTAGGATCCCAGACACGATTTCATGGGACTATAACTTCGAACCTGCAGGAAGTACTCCCCTTAGCTTTACTGTTAAGTCTGCAGTACTGAAAGAAGCTATAGATGATTTGGAATGGCCAGGATCAGGCATTCAGATTATCCTACAACCAGTTCCTCCCTCAGTTACCTTTAAAGGTGAAGGCCACGGTGACTTACAGATTGATTTCATGTATTATGCGAACACCGATCTTTTGATTGCTTTCCAGTGCGACCGCAGGGTCTCTTACAGGTACAAGTACAAGTTCCTACGGGCAACGACATCAAACATACCGAGCAGCGTGATAAAAGATAACAGAGGTAGCAAGTTGACAATTGGGAGAGGGGGAATGTTAAAAGTACAACATTTGGTTTCGGTTGCAAGGCCATCATCTATTTCACACAGCCATGTTGATTCTTCTGGCTATCAGCAACCCAGCCGAATTGCGTATATTGAATTCTTTGTCAAGCCAGAGGTAGAAGAAGACAATGAAAATGATTCATAG

Network for GWHGAAZE027869

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02144.17	Rad1	27	231	2.00E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02830	HRAD1, RAD17	Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0000077	biological_process	DNA damage checkpoint
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.711
	SRR3591706	second leaf	2.375
	SRR3591707	mature leaf	3.120
	SRR3591708	Shoot apex	9.704
	SRR3591709	Stem	2.963
	SRR3591710	White floral bud	2.890
	SRR3591711	White flower	3.528
	SRR3591712	Green floral bud	3.631
	SRR3591713	Yellow flower	3.418
SRP173429	SRR8316895	Juvenile bud stage	5.126
	SRR8316896	Juvenile bud stage	7.131
	SRR8316897	Juvenile bud stage	3.223
	SRR8316894	Third green stage	2.919
	SRR8316900	Third green stage	7.548
	SRR8316901	Third green stage	7.752
	SRR8316898	Complete white stage	3.968
	SRR8316899	Complete white stage	12.993
	SRR8316903	Complete white stage	5.198
	SRR8316902	Silver flowering stage	5.434
	SRR8316904	Silver flowering stage	6.202
	SRR8316905	Silver flowering stage	3.045
	SRR8316906	Gold flowering stage	7.332
	SRR8316907	Gold flowering stage	7.386
	SRR8316908	Gold flowering stage	6.569
SRP132670	SRR6706286	Control	4.937
	SRR6706287	Light intensity 50%	5.316
	SRR6706288	Light intensity 20%	5.766
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.504
	CNS0095593	Slightly white alabastrum(diploid) 2	4.511
	CNS0095594	Slightly white alabastrum(diploid) 3	5.722
	CNS0095595	Whole white alabastrum(diploid) 2	5.031
	CNS0095596	Whole white alabastrum(diploid) 3	6.305
	CNS0095597	Whole white alabastrum(diploid) 4	4.946
	CNS0095598	Silvery flower (diploied) 1	4.522
	CNS0095599	Silvery flower (diploied) 2	3.985
	CNS0095600	Silvery flower (diploied) 3	8.969
	CNS0095601	Golden flower (diploid) 1	4.984
	CNS0095602	Golden flower (diploid) 2	6.489
	CNS0095603	Golden flower (diploid) 3	4.727
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.618
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.315
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.537
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.023
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.945
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.983
	CNS0095610	Silvery flower (tetraploid) 1	2.408
	CNS0095611	Silvery flower (tetraploid) 2	3.655
	CNS0095612	Silvery flower (tetraploid) 3	2.755
	CNS0095613	Golden flower (tetraploid) 1	2.000
	CNS0095614	Golden flower (tetraploid) 2	2.411
	CNS0095615	Golden flower (tetraploid) 3	1.582
CRA001975	CRR073297	Stem 1	6.629
	CRR073298	Stem 2	7.719
	CRR073299	Stem 3	6.999
	CRR073300	Leaf 1	7.306
	CRR073301	Leaf 2	6.528
	CRR073302	Leaf 3	5.238
	CRR073303	Juvenile bud 1	10.036
	CRR073304	Juvenile bud 2	7.102
	CRR073305	Juvenile bud 3	5.460
	CRR073306	Third green 1	3.365
	CRR073307	Third green 2	2.837
	CRR073308	Third green 3	3.916
	CRR073309	Second white 1	2.854
	CRR073310	Second white 2	5.362
	CRR073311	Second white 3	2.697
	CRR073312	Silver flowering 1	4.068
	CRR073313	Silver flowering 2	2.684
	CRR073314	Silver flowering 3	2.267
	CRR073315	Gold flowering 1	7.373
	CRR073316	Gold flowering 2	10.548
	CRR073317	Gold flowering 3	5.346
	CRR073318	Tawny withering 1	4.429
	CRR073319	Tawny withering 2	6.800
	CRR073320	Tawny withering 3	3.727