Gene detail

Detail information of GWHGAAZE027861

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010240878.1	4.8667E-115	PREDICTED: zinc finger CCCH domain-containing protein 56 isoform X1 [Nelumbo nucifera]
Swissprot	tr\|Q9LQM3\|C3H12_ARATH	8E-82	Zinc finger CCCH domain-containing protein 12
trEMBL	tr\|A0A068UXL7\|A0A068UXL7_COFCA	7E-113	Coffea canephora DH200=94 genomic scaffold, scaffold_72 {ECO:0000313\|EMBL:CDP13047.1}
TAIR10	AT1G32360.1	2E-64	Zinc finger (CCCH-type) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	30394438	30397984	-
GWHAAZE00000008	mRNA	30394438	30397984	-
GWHAAZE00000008	exon	30397177	30397984	-
GWHAAZE00000008	exon	30394438	30394854	-
GWHAAZE00000008	CDS	30397177	30397984	-
GWHAAZE00000008	CDS	30394631	30394854	-
GWHAAZE00000008	three_prime_UTR	30394438	30394630	-

Transcript Sequence
>GWHTAAZE027895 ATGGACTCCGGTCAAGAATTGGGGTTTTTGAGCGAAGATATTATTCAAATAATCCCTATAAACCAAGAAAACGGTGGTGAAAATCAAAGGTCGGGATTGATTGATACCGCCGTTTGGGCTAATAAGGATGATTATGGGGCTTCAAATATAGAAACTTCAATTGATAATACTTATAATTCAAATTATGATGGAAGAAGGCAAACCCTAGCTTGGTCCGATAGTGATTCCCCTTGCAAGAAACCGAGAAACTCACTATTGAGTGATTCACCATCCACTAATCGATCAAGGGTGATACCGCGAGTTTTTTTCAAGACAAAACTTTGTTGCAAGTTCCAAGCCAAAACTTGCCCCTATGAATCAAATTGCAATTTCGCTCATGGCCTCGAGGAGCTTCGAGTGCTGCCACCGAATTGGAAAGAAATCGTGGCGGCTGATGAGGAGGAGCGACGGGTATTGGACGAGCCAAAGGAGGATTTTCAAATTCCGTCACTCGGCTCTTCGGGGTACTCTATAGAGTCTTCAAGATCTTCAGGGCGACTTTGCCAAAAGTTTTTTACCCAGGAGGGGTGCCCTTATGGGGATCGTTGCAATTTCTTTCATGATGAACAATTGAGAAATCGAGAAAGCGTGGCAATATGTTTGGGCCCCACGTCTGGTGGCAGATATAGGGCCCGAGATGATGGTGTCAGCGGTGCAAGTGGGACATCATCTAAGCCTCGGAATTGGAAAACTAGGATTTGTAACAAGTGGGAACAAACGGGGAATTGCCCTTTTGGAAGCAAGTGCAACTTCGCTCATGGAGTTGGAGAACTACATCAATTTGGTGGGAGGCCCCTCGTTCAGACAGATGCTATAAATTTTTCGGCTGCTGTGGACCCAAATTGCAGATCAGGAGCACCTTCAAACACCAAAGTTCCAACACAAAAGCTTGCCAGCACAATCCAAAGGACAGGACGGAGACCCGGTGAGAAGTGGAAGGGCCCTGATAAAATTAGCCTAATTTACGGCGACTGGATCGAAGATCTTGAGTAGAATTGTGGAACTCAGAAATATTTTCCTTGGAAAAATACGTTTTTCTTGGAAAATAAATCAATCAAGACTTCATAATTTTAGGTTCTTGGATTAAAATGAGCTTAGTTGTGTTTTTCTATTCGTAGATGTAGATGGTTGTGATTTTGCCTTTGTAGACTTTGTACAATCTTTTGTTTTCGTAGCGGTCTTATTC

Network for GWHGAAZE027861

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	103	127	8.80E-07
PF14608.7	zf-CCCH_2	181	200	0.25
PF00642.25	zf-CCCH	242	267	1.20E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.117
	SRR3591706	second leaf	0.347
	SRR3591707	mature leaf	1.048
	SRR3591708	Shoot apex	1.534
	SRR3591709	Stem	1.604
	SRR3591710	White floral bud	1.343
	SRR3591711	White flower	1.112
	SRR3591712	Green floral bud	1.044
	SRR3591713	Yellow flower	0.616
SRP173429	SRR8316895	Juvenile bud stage	3.066
	SRR8316896	Juvenile bud stage	4.397
	SRR8316897	Juvenile bud stage	2.757
	SRR8316894	Third green stage	1.692
	SRR8316900	Third green stage	3.301
	SRR8316901	Third green stage	3.398
	SRR8316898	Complete white stage	0.725
	SRR8316899	Complete white stage	4.620
	SRR8316903	Complete white stage	1.202
	SRR8316902	Silver flowering stage	1.303
	SRR8316904	Silver flowering stage	0.942
	SRR8316905	Silver flowering stage	0.616
	SRR8316906	Gold flowering stage	2.229
	SRR8316907	Gold flowering stage	1.546
	SRR8316908	Gold flowering stage	1.643
SRP132670	SRR6706286	Control	1.953
	SRR6706287	Light intensity 50%	2.183
	SRR6706288	Light intensity 20%	2.251
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.417
	CNS0095593	Slightly white alabastrum(diploid) 2	4.050
	CNS0095594	Slightly white alabastrum(diploid) 3	3.156
	CNS0095595	Whole white alabastrum(diploid) 2	3.802
	CNS0095596	Whole white alabastrum(diploid) 3	2.845
	CNS0095597	Whole white alabastrum(diploid) 4	4.514
	CNS0095598	Silvery flower (diploied) 1	4.626
	CNS0095599	Silvery flower (diploied) 2	4.105
	CNS0095600	Silvery flower (diploied) 3	1.832
	CNS0095601	Golden flower (diploid) 1	5.002
	CNS0095602	Golden flower (diploid) 2	2.358
	CNS0095603	Golden flower (diploid) 3	2.875
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.571
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.603
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.234
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.527
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.621
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.644
	CNS0095610	Silvery flower (tetraploid) 1	4.912
	CNS0095611	Silvery flower (tetraploid) 2	5.652
	CNS0095612	Silvery flower (tetraploid) 3	3.076
	CNS0095613	Golden flower (tetraploid) 1	3.325
	CNS0095614	Golden flower (tetraploid) 2	3.604
	CNS0095615	Golden flower (tetraploid) 3	1.879
CRA001975	CRR073297	Stem 1	4.049
	CRR073298	Stem 2	3.352
	CRR073299	Stem 3	0.405
	CRR073300	Leaf 1	5.653
	CRR073301	Leaf 2	3.737
	CRR073302	Leaf 3	0.377
	CRR073303	Juvenile bud 1	0.892
	CRR073304	Juvenile bud 2	0.085
	CRR073305	Juvenile bud 3	0.807
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.074
	CRR073311	Second white 3	0.087
	CRR073312	Silver flowering 1	0.039
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.072
	CRR073316	Gold flowering 2	0.899
	CRR073317	Gold flowering 3	0.215
	CRR073318	Tawny withering 1	1.153
	CRR073319	Tawny withering 2	2.118
	CRR073320	Tawny withering 3	2.132