Gene detail

Detail information of GWHGAAZE027852

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAL25342.1	2.4226E-141	putative zinc-binding protein [Platanus x acerifolia]
Swissprot	tr\|P0CB19\|Y3081_ARATH	0.000006	Uncharacterized protein At3g50808
trEMBL	tr\|Q0VJB4\|Q0VJB4_PLAAC	9E-142	Putative zinc-binding protein {ECO:0000313\|EMBL:CAL25342.1}
TAIR10	AT4G17900.1	9E-89	PLATZ transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	30245937	30248644	+
GWHAAZE00000008	mRNA	30245937	30248644	+
GWHAAZE00000008	exon	30245937	30246035	+
GWHAAZE00000008	exon	30246532	30246729	+
GWHAAZE00000008	exon	30247407	30247622	+
GWHAAZE00000008	exon	30248396	30248644	+
GWHAAZE00000008	CDS	30245937	30246035	+
GWHAAZE00000008	CDS	30246532	30246729	+
GWHAAZE00000008	CDS	30247407	30247622	+
GWHAAZE00000008	CDS	30248396	30248644	+

Transcript Sequence
>GWHTAAZE027886 ATAAACACTACGGCACTATCAATTACTTCGATCAAACTGGCGATTGATAATCAAGAAATCCCAGTCCGTGAAATCAAGCCCAAGAACAGGAGAATAATGGGAGCTGGTGGACCTGAGGAAGAAGACAACAAGTGGCCTCCATGGTTGAAGCCTCTATTGAAAGAAAACTTCTTTGTTCAATGCAAATTACACGCTGATTCTCACAAGAGTGAATGTAACATGTACTGTTTGGATTGTATGAATGGGGCTCTCTGTTCTGTTTGTCTCAATTATCACAAGGATCATCGCGCAATTCAGATAAGGAGGTCATCATACCATGATGTGATTAGGGTTAATGAGATACAAAAGTTTTTGGACATCACAGCAGTGCAGACCTATGTGATCAACAGTGCAAAGGTCGTGTTCTTGAACGAACGGCCACAGCCGAGGCCCGGTAAGGGTGTAACCAACACCTGCGAAGTATGCGAGCGCAGCCTCCTCGACTCCTTCCGATTCTGCTCTCTTGGCTGCAAGATTGTTGGGACGTCATCAAATTTCCAAAAGATGAAAAGGCATTCACCGGAGAGGAAAAGGTCAATGATAACGGCGTCAGACTCTGATGAGTCATACAGCAGCAGTAGCCACGGTAGAAATAAGCACAACAACAACGTGCAAAGTTTCACGCCGTCAACTCCACCCCCAACTGTGGTTAATTACAGAACTGCCAAGAGGAGAAAGGGTATTCCCCACAGAGCCCCAATGGGACTAATTATAGAGTACTAA

Network for GWHGAAZE027852

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04640.15	PLATZ	101	172	7.30E-30

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PLATZ

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	136.879
	SRR3591706	second leaf	38.852
	SRR3591707	mature leaf	92.281
	SRR3591708	Shoot apex	66.404
	SRR3591709	Stem	226.040
	SRR3591710	White floral bud	508.470
	SRR3591711	White flower	654.710
	SRR3591712	Green floral bud	133.628
	SRR3591713	Yellow flower	546.494
SRP173429	SRR8316895	Juvenile bud stage	50.577
	SRR8316896	Juvenile bud stage	64.661
	SRR8316897	Juvenile bud stage	55.782
	SRR8316894	Third green stage	29.500
	SRR8316900	Third green stage	72.645
	SRR8316901	Third green stage	93.805
	SRR8316898	Complete white stage	201.588
	SRR8316899	Complete white stage	263.838
	SRR8316903	Complete white stage	318.652
	SRR8316902	Silver flowering stage	321.438
	SRR8316904	Silver flowering stage	463.136
	SRR8316905	Silver flowering stage	236.341
	SRR8316906	Gold flowering stage	860.680
	SRR8316907	Gold flowering stage	631.061
	SRR8316908	Gold flowering stage	784.653
SRP132670	SRR6706286	Control	132.434
	SRR6706287	Light intensity 50%	130.438
	SRR6706288	Light intensity 20%	106.785
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	91.034
	CNS0095593	Slightly white alabastrum(diploid) 2	99.185
	CNS0095594	Slightly white alabastrum(diploid) 3	70.812
	CNS0095595	Whole white alabastrum(diploid) 2	63.555
	CNS0095596	Whole white alabastrum(diploid) 3	40.450
	CNS0095597	Whole white alabastrum(diploid) 4	63.848
	CNS0095598	Silvery flower (diploied) 1	202.972
	CNS0095599	Silvery flower (diploied) 2	175.709
	CNS0095600	Silvery flower (diploied) 3	580.729
	CNS0095601	Golden flower (diploid) 1	259.695
	CNS0095602	Golden flower (diploid) 2	484.588
	CNS0095603	Golden flower (diploid) 3	461.165
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.560
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.337
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.437
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.677
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.463
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.363
	CNS0095610	Silvery flower (tetraploid) 1	576.993
	CNS0095611	Silvery flower (tetraploid) 2	613.098
	CNS0095612	Silvery flower (tetraploid) 3	548.922
	CNS0095613	Golden flower (tetraploid) 1	477.084
	CNS0095614	Golden flower (tetraploid) 2	501.462
	CNS0095615	Golden flower (tetraploid) 3	741.797
CRA001975	CRR073297	Stem 1	158.803
	CRR073298	Stem 2	141.212
	CRR073299	Stem 3	151.248
	CRR073300	Leaf 1	217.666
	CRR073301	Leaf 2	234.379
	CRR073302	Leaf 3	173.962
	CRR073303	Juvenile bud 1	293.782
	CRR073304	Juvenile bud 2	392.987
	CRR073305	Juvenile bud 3	310.352
	CRR073306	Third green 1	565.991
	CRR073307	Third green 2	439.281
	CRR073308	Third green 3	497.032
	CRR073309	Second white 1	424.018
	CRR073310	Second white 2	625.104
	CRR073311	Second white 3	472.275
	CRR073312	Silver flowering 1	363.565
	CRR073313	Silver flowering 2	308.897
	CRR073314	Silver flowering 3	379.818
	CRR073315	Gold flowering 1	115.333
	CRR073316	Gold flowering 2	161.611
	CRR073317	Gold flowering 3	123.815
	CRR073318	Tawny withering 1	241.976
	CRR073319	Tawny withering 2	338.068
	CRR073320	Tawny withering 3	244.502