Gene detail

Detail information of GWHGAAZE027826

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006368425.1	1.8808E-142	hypothetical protein POPTR_0001s02710g [Populus trichocarpa]
Swissprot	tr\|A4VCM0\|NAC45_ARATH	1E-72	NAC domain-containing protein 45 {ECO:0000312\|EMBL:AEE73912.1}
trEMBL	tr\|U5GS83\|U5GS83_POPTR	7E-143	Uncharacterized protein {ECO:0000313\|EMBL:ERP64994.1}
TAIR10	AT4G17980.1	5E-81	NAC domain containing protein 71

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	29160075	29162375	+
GWHAAZE00000008	mRNA	29160075	29162375	+
GWHAAZE00000008	exon	29160075	29160246	+
GWHAAZE00000008	exon	29160859	29161136	+
GWHAAZE00000008	exon	29161434	29161730	+
GWHAAZE00000008	exon	29162074	29162375	+
GWHAAZE00000008	CDS	29160075	29160246	+
GWHAAZE00000008	CDS	29160859	29161136	+
GWHAAZE00000008	CDS	29161434	29161730	+
GWHAAZE00000008	CDS	29162074	29162274	+
GWHAAZE00000008	three_prime_UTR	29162275	29162375	+

Transcript Sequence
>GWHTAAZE027860 AGGGTAGAGAGAGAAATGGCAGGGGCATCATTGCCACCAGGATTTCGTTTCCACCCAACTGATGAGGAATTGGTTGAGTATTATTTGAAGAGGAAAATAGAGGGACTTGAGATTGAACTTGAAGTGATTCCTGTTATTGATTTGTACAAATTTGACCCTTGGGAGCTGCCTGAGAAATCATTCCTTCCAAACCGCGATATGGAATGGTTTTTTTTTTGTCCCCGTGATCGCAAGTACCCAAATGGATCGCGTACAAATCGAGCCACTAGAGCCGGGTATTGGAAAGCCACTGGTAAAGACCGGAAAGTAATGTGTCAATCTTCGGTGGTGGGGTATCGAAAGACCCTTGTTTTTTATCGCGGTCGAGCTCCTTTAGGGGATAGAACGGATTGGGTTATGCACGAATATCGCCTTTGTGATGATGTTTCTGTAGCCCCTCCAAGTTTTCAGGGACCATTTGCCTTGTGCCGAATCATGAAAAAGAACGGAGATATAAAAGATAAACAAGTTGGAGGGAGTTCGAGCAACAATGGGAGCTCAGCCTCTACTGGAACTATGAATGAGCCCATGGTCAACCCCGATGACATGGCATTTCAAGCAAGTTTTATGGGCAGTGAGAGTAATTATGCAAGTCCCATTGCTTCTCCATATCAAAGTAGGCCGATGATGGACTATGAACCAGCTTCAATGGGGCCTATACCTTCAAGCCAATGGGTCTCACCGGACCTAATCCTTGATTCCTCAAAGGAATTCCCACAAGGCCAGAGGGTGTCGGGGTATTTTCCGGAGCACGAATTCCCAAGCTCATTGACTCCATGGGAGCCGTTTAGTCAATACGAAGGCTCATCCAATTCATTGTACTCAAATTTTACAGAGGAATTTGAAGGTATTGATGATTTCAATGGATATTCGGGGCATGGAAACTATACGGGATTCTTTGGGAACTAGAATATATTTGTCCGGGACTTCCCCTTTTTTATCGTTGTTCTTGGATTTTCAAATCTTGAGCACAACCTTAGAACATTTTAGGATTGGTTATATTAATTGGT

Network for GWHGAAZE027826

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	12	138	1.60E-39

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.204
	SRR3591706	second leaf	0.871
	SRR3591707	mature leaf	0.716
	SRR3591708	Shoot apex	1.818
	SRR3591709	Stem	3.025
	SRR3591710	White floral bud	4.179
	SRR3591711	White flower	3.287
	SRR3591712	Green floral bud	5.612
	SRR3591713	Yellow flower	4.212
SRP173429	SRR8316895	Juvenile bud stage	0.911
	SRR8316896	Juvenile bud stage	0.786
	SRR8316897	Juvenile bud stage	0.351
	SRR8316894	Third green stage	0.310
	SRR8316900	Third green stage	2.401
	SRR8316901	Third green stage	1.011
	SRR8316898	Complete white stage	0.431
	SRR8316899	Complete white stage	1.329
	SRR8316903	Complete white stage	0.787
	SRR8316902	Silver flowering stage	0.347
	SRR8316904	Silver flowering stage	0.077
	SRR8316905	Silver flowering stage	0.166
	SRR8316906	Gold flowering stage	0.115
	SRR8316907	Gold flowering stage	0.483
	SRR8316908	Gold flowering stage	0.229
SRP132670	SRR6706286	Control	1.439
	SRR6706287	Light intensity 50%	1.178
	SRR6706288	Light intensity 20%	1.247
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.907
	CNS0095593	Slightly white alabastrum(diploid) 2	3.170
	CNS0095594	Slightly white alabastrum(diploid) 3	1.256
	CNS0095595	Whole white alabastrum(diploid) 2	1.377
	CNS0095596	Whole white alabastrum(diploid) 3	1.959
	CNS0095597	Whole white alabastrum(diploid) 4	2.226
	CNS0095598	Silvery flower (diploied) 1	0.247
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.223
	CNS0095601	Golden flower (diploid) 1	0.144
	CNS0095602	Golden flower (diploid) 2	0.379
	CNS0095603	Golden flower (diploid) 3	0.636
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.096
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.172
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.524
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.462
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.680
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.903
	CNS0095610	Silvery flower (tetraploid) 1	0.270
	CNS0095611	Silvery flower (tetraploid) 2	0.072
	CNS0095612	Silvery flower (tetraploid) 3	0.272
	CNS0095613	Golden flower (tetraploid) 1	0.302
	CNS0095614	Golden flower (tetraploid) 2	0.341
	CNS0095615	Golden flower (tetraploid) 3	0.302
CRA001975	CRR073297	Stem 1	1.353
	CRR073298	Stem 2	1.788
	CRR073299	Stem 3	1.663
	CRR073300	Leaf 1	2.746
	CRR073301	Leaf 2	2.627
	CRR073302	Leaf 3	2.077
	CRR073303	Juvenile bud 1	5.751
	CRR073304	Juvenile bud 2	1.431
	CRR073305	Juvenile bud 3	2.652
	CRR073306	Third green 1	0.264
	CRR073307	Third green 2	0.387
	CRR073308	Third green 3	0.610
	CRR073309	Second white 1	0.444
	CRR073310	Second white 2	0.182
	CRR073311	Second white 3	0.233
	CRR073312	Silver flowering 1	0.428
	CRR073313	Silver flowering 2	0.055
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.287
	CRR073316	Gold flowering 2	1.647
	CRR073317	Gold flowering 3	1.338
	CRR073318	Tawny withering 1	0.722
	CRR073319	Tawny withering 2	0.427
	CRR073320	Tawny withering 3	0.131