Gene detail

Detail information of GWHGAAZE027821

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007039562.1	0	Pyruvate kinase isozyme G, chloroplastic [Theobroma cacao]
COG	YP_003690565.1	8E-122	pyruvate kinase
Swissprot	tr\|Q40546\|KPYG_TOBAC	0	Pyruvate kinase isozyme G, chloroplastic (Precursor)
trEMBL	tr\|A0A061G3S1\|A0A061G3S1_THECC	0	Pyruvate kinase {ECO:0000256\|RuleBase:RU000504}
TAIR10	AT1G32440.1	0	plastidial pyruvate kinase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	29025320	29050805	+
GWHAAZE00000008	mRNA	29025320	29050805	+
GWHAAZE00000008	exon	29025320	29025544	+
GWHAAZE00000008	exon	29030889	29031167	+
GWHAAZE00000008	exon	29037209	29037374	+
GWHAAZE00000008	exon	29038698	29038832	+
GWHAAZE00000008	exon	29039326	29039414	+
GWHAAZE00000008	exon	29039972	29040034	+
GWHAAZE00000008	exon	29041283	29041458	+
GWHAAZE00000008	exon	29045407	29045509	+
GWHAAZE00000008	exon	29046303	29046451	+
GWHAAZE00000008	exon	29047825	29047933	+
GWHAAZE00000008	exon	29050692	29050805	+
GWHAAZE00000008	CDS	29025320	29025544	+
GWHAAZE00000008	CDS	29030889	29031167	+
GWHAAZE00000008	CDS	29037209	29037374	+
GWHAAZE00000008	CDS	29038698	29038832	+
GWHAAZE00000008	CDS	29039326	29039414	+
GWHAAZE00000008	CDS	29039972	29040034	+
GWHAAZE00000008	CDS	29041283	29041458	+
GWHAAZE00000008	CDS	29045407	29045509	+
GWHAAZE00000008	CDS	29046303	29046451	+
GWHAAZE00000008	CDS	29047825	29047933	+
GWHAAZE00000008	CDS	29050692	29050805	+

Transcript Sequence
>GWHTAAZE027855 ATGGCGACGATGAATCTACATACTGGAATGTCCATGTTGAAATTGGATACGACTAGGGCTCCCGATCGCCTCTCCTCGTCCAAGAACGTTAACGAGTTTTTCTACGAATCAAAAATCCGAAAACGATGCGTTGGGAAAGAGTTTCTGCCGATTAGAGCTATGACGATCACCGAGCAGGGACAAGGAGCTACTAATCTTTCACCGTCTAATGGTGCCATCGATCCTGATAAATTGCAGTCCTCCGAGGTGCAATCTAGTGATTATAGTCTGGGGCCAGTGAGATCAACTTCAGATGCTAGAAGAAAGACAAAGATAGTGTGTACAATTGGTCCTTCTACAAGTTCGCGTGAGATGATATGGAAACTGGCAGAAACTGGAATGAATGTGGCCCGCTTAAATATGTCTCATGGGGACCATTCATCACACCAGAAAACCATTGATCTGGTTAAAGAATACAATGCTCAATTTGAAGACAAGGTTGTAGCCATAATGTTGGACACAAAGGGACCAGAAGTTCGAAGTGGGGATATGCCTAAACCAATCCTCCTTAAGGAAGGGCAAGAGTTCAATTTCACTATTAAAAGAGGAGTCAGCACAGAAAACACTGTTAGTGTAAATTATGACGACTTCGTAAATGATGTGGAGGTTGGGGACATCATACTCGTTGATGGTGGAATGATGTCATTGGCTGTGAAATCAAAGACAAAGGATTCAGTGAAATGCACTGTAATTGATGGCGGGGAACTGAAATCTAGGCGACATTTAAACGTGCGTGGGAAAAGTGCAACTCTACCTTCAATAACAGGCTGCAATGCTGATATTAATGTGATTGTAAAGATTGAGAGTGCGGATTCTATACCAAATCTTCATTCAATACTTTCTGCTTCAGACGGGGCAATGGTGGCCCGTGGAGACCTTGGAGCTGAACTTCCAATTGAGGAAGTCCCTTTATTGCAGGAAGATATAATAAGAAGGTGTAGGAGCATGCAGAAACCTGTGATAGTGGCAACAAACATGCTAGAGAGCATGATTAATCACCCAACCCCTACAAGGGCAGAAGTTTCTGACATTGCAATTGCTGTACGAGAAGGTGCTGATGCTGTCATGCTTTCTGGAGAAACTGCCCATGGAAAATATCCCCTGAAAGCTGTTAAAGTGATGCACACTGTGGCATTGAGGACTGAGTCAAGTCTACCGATCAGTATCACTCCTCCAGGTCAATCTACTGCCTATAAGAGCCATATGGGTGAAATGTTTGCTTTCCATGCCACCACAATGGCCAACACCCTATCTACTCCCATCATTGTCTTCACAAGAACAGGTTCCATGGCTATAATTTTAAGCCATTATCGTCCGGCTTCAACAATCTTTGCCTTCACAAATGTGAAAAGGGTTAAGCAAAGGTTAGCTCTTTATCAAGGTGTCATGCCTATATACATGGAGTTCTCAAATGATGCAGAGGAGACGTTTTCTCGAGCTCTAAAGCTTTTATTGAGTAAGAGCCTGATGAATGAAGGAGAGCATGTCACTCTTGTCCAAAGCGGAGCACAACCAATTTGGCGTCGACATTCTACGCACCACATCCAAGTTCGTCAGGTCCAAGGTTAA

Network for GWHGAAZE027821

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00224.22	PK	101	268	1.60E-46
PF00224.22	PK	272	399	9.90E-53
PF02887.17	PK_C	423	513	5.10E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00873	PK, pyk	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Pyruvate metabolism	map00620
		Purine metabolism	map00230
		Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0004743	molecular_function	pyruvate kinase activity
GO:0000287	molecular_function	magnesium ion binding
GO:0030955	molecular_function	potassium ion binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.038
	SRR3591706	second leaf	33.593
	SRR3591707	mature leaf	75.805
	SRR3591708	Shoot apex	19.205
	SRR3591709	Stem	24.276
	SRR3591710	White floral bud	27.204
	SRR3591711	White flower	26.208
	SRR3591712	Green floral bud	53.286
	SRR3591713	Yellow flower	41.366
SRP173429	SRR8316895	Juvenile bud stage	21.545
	SRR8316896	Juvenile bud stage	35.019
	SRR8316897	Juvenile bud stage	19.220
	SRR8316894	Third green stage	18.823
	SRR8316900	Third green stage	57.368
	SRR8316901	Third green stage	51.582
	SRR8316898	Complete white stage	21.797
	SRR8316899	Complete white stage	59.232
	SRR8316903	Complete white stage	39.300
	SRR8316902	Silver flowering stage	18.901
	SRR8316904	Silver flowering stage	31.525
	SRR8316905	Silver flowering stage	15.461
	SRR8316906	Gold flowering stage	35.655
	SRR8316907	Gold flowering stage	38.892
	SRR8316908	Gold flowering stage	33.218
SRP132670	SRR6706286	Control	44.035
	SRR6706287	Light intensity 50%	45.772
	SRR6706288	Light intensity 20%	43.054
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.820
	CNS0095593	Slightly white alabastrum(diploid) 2	20.389
	CNS0095594	Slightly white alabastrum(diploid) 3	25.621
	CNS0095595	Whole white alabastrum(diploid) 2	26.348
	CNS0095596	Whole white alabastrum(diploid) 3	33.430
	CNS0095597	Whole white alabastrum(diploid) 4	29.808
	CNS0095598	Silvery flower (diploied) 1	27.200
	CNS0095599	Silvery flower (diploied) 2	28.658
	CNS0095600	Silvery flower (diploied) 3	52.264
	CNS0095601	Golden flower (diploid) 1	28.368
	CNS0095602	Golden flower (diploid) 2	53.426
	CNS0095603	Golden flower (diploid) 3	51.930
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.559
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.043
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.940
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.184
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.028
	CNS0095609	Whole white alabastrum(tetraploid) 3	53.765
	CNS0095610	Silvery flower (tetraploid) 1	42.091
	CNS0095611	Silvery flower (tetraploid) 2	46.808
	CNS0095612	Silvery flower (tetraploid) 3	28.548
	CNS0095613	Golden flower (tetraploid) 1	34.333
	CNS0095614	Golden flower (tetraploid) 2	41.707
	CNS0095615	Golden flower (tetraploid) 3	46.985
CRA001975	CRR073297	Stem 1	29.495
	CRR073298	Stem 2	31.526
	CRR073299	Stem 3	26.232
	CRR073300	Leaf 1	39.493
	CRR073301	Leaf 2	35.458
	CRR073302	Leaf 3	33.829
	CRR073303	Juvenile bud 1	48.049
	CRR073304	Juvenile bud 2	36.617
	CRR073305	Juvenile bud 3	46.823
	CRR073306	Third green 1	26.958
	CRR073307	Third green 2	24.842
	CRR073308	Third green 3	28.069
	CRR073309	Second white 1	27.459
	CRR073310	Second white 2	22.115
	CRR073311	Second white 3	24.897
	CRR073312	Silver flowering 1	22.811
	CRR073313	Silver flowering 2	16.615
	CRR073314	Silver flowering 3	19.760
	CRR073315	Gold flowering 1	29.984
	CRR073316	Gold flowering 2	42.584
	CRR073317	Gold flowering 3	28.639
	CRR073318	Tawny withering 1	12.957
	CRR073319	Tawny withering 2	12.177
	CRR073320	Tawny withering 3	12.351